[12gevmoller_sim] [EXTERNAL] [JeffersonLab/remoll] 203e17: Ignore root files when creating Docker container
Wouter Deconinck
noreply at github.com
Mon May 11 13:41:42 EDT 2020
Branch: refs/heads/develop
Home: https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=yEGCoeLmYsXU5pYTdtWZa6GPKly4gN4nyEsEQpGVBgA&e=
Commit: 203e17e07cd416aec8ee8cb9d5a9b68dfc65b966
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_203e17e07cd416aec8ee8cb9d5a9b68dfc65b966&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=ru-ewH-U0i76pSTM6z-0KYw4hYN6W-_q5XqCzO4G460&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-08 (Fri, 08 May 2020)
Changed paths:
M .dockerignore
Log Message:
-----------
Ignore root files when creating Docker container
Commit: 5a2d6f7934f8fdd31a5a9757f84fc9906ee9f70d
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_5a2d6f7934f8fdd31a5a9757f84fc9906ee9f70d&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=MYllYF21a0vZErt8oUwMQAy--HnMC5B9DHgh4cVlbTA&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-08 (Fri, 08 May 2020)
Changed paths:
M Dockerfile
Log Message:
-----------
Instructions on how to build Docker container
Commit: c1f92fce557408f11e4fe80abe8cabae14ebc2dc
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_c1f92fce557408f11e4fe80abe8cabae14ebc2dc&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=By4yyk2Ah1QyEkNBpwVMrJtStmCS1hGx_4AO7655yJw&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-08 (Fri, 08 May 2020)
Changed paths:
M Dockerfile
Log Message:
-----------
Cleanup, headings, and use /etc/profile for environment
Commit: 97315f428ef3b145030429de2dd28682d4313b7b
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_97315f428ef3b145030429de2dd28682d4313b7b&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=Y8zuPQYPYdvZkmV4iI7nOVbL3u2D5MxJvc66SExAwVI&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-08 (Fri, 08 May 2020)
Changed paths:
A cmake/templates/remoll.csh.in
A cmake/templates/remoll.sh.in
Log Message:
-----------
Two environment scripts for bin/
Commit: 11dc18cf23959592f149362f628d0da9235eaae5
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_11dc18cf23959592f149362f628d0da9235eaae5&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=nOITPD-V_7A4v4AwUX3a3uiawqEgP0rDHwPM-HB0KKs&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-08 (Fri, 08 May 2020)
Changed paths:
M Dockerfile
Log Message:
-----------
Load environment scripts from /etc/profile
Commit: d9ce914aa7a651a88f1cb406da84169bd2bbfc62
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_d9ce914aa7a651a88f1cb406da84169bd2bbfc62&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=QlGu47IIuu12M5I0rJJIKB5oYWZmV9sDEmjXvdIY9TE&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-08 (Fri, 08 May 2020)
Changed paths:
M Dockerfile
Log Message:
-----------
Clean build products in Docker
Commit: 7483d3099d87ae06e02d0a0dad5ea0b016b8adfb
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_7483d3099d87ae06e02d0a0dad5ea0b016b8adfb&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=BGeQI0zBI5lkKV5Qwd6xK5F8n6atkxZcFSm02kUU8Ec&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-08 (Fri, 08 May 2020)
Changed paths:
M Dockerfile
Log Message:
-----------
Add tini to deal with zombies
Commit: e50acc443110328d2d7978568461d600ed068e1d
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_e50acc443110328d2d7978568461d600ed068e1d&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=3HPyaVcoW6dE-vDq_BlNUKCcvStdtS3mcVCMajEdRyI&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-08 (Fri, 08 May 2020)
Changed paths:
M Dockerfile
Log Message:
-----------
Skip entrypoint script and use tini and /etc/profile
Commit: 901d28e7059c39eede25057556bf4601c8664a47
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_901d28e7059c39eede25057556bf4601c8664a47&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=xgNB12VXzAWhd3nCdu0JK-kUt_A5PRzQ4s-1PKBJAUs&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-08 (Fri, 08 May 2020)
Changed paths:
M Dockerfile
Log Message:
-----------
Just run remoll when running
Commit: 1f0aee8ac18a10bc92def5d93add288d610d4756
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_1f0aee8ac18a10bc92def5d93add288d610d4756&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=GUYGr1qOEcJyrevTLdBEHgFsnZNTHPW0dC9aztBmt-Q&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-08 (Fri, 08 May 2020)
Changed paths:
M scripts/tests/test_geometries.sh
M scripts/tests/test_macros.sh
Log Message:
-----------
Use remoll in path, not in build
Commit: e5afed1f1a72db0357c8b5ff92dda72d854b3fef
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_e5afed1f1a72db0357c8b5ff92dda72d854b3fef&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=yoEna4VrV2SX5hXlwXx3RlmV92hesZA_f_ErfCZCudk&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-09 (Sat, 09 May 2020)
Changed paths:
M Dockerfile
Log Message:
-----------
Note on building in directories that are hyperlinked to lustre
If ~/scratch/ is actually /lustre/$USER/, then building in ~/scratch
will fail but building in /lustre/$USER/ will work.
Commit: 9a285a33d3163a4f0ef7202fa615fec349ec7139
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_9a285a33d3163a4f0ef7202fa615fec349ec7139&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=RA4PW0nQGC4Wr63-iigNn7CZ0yKy9aXaRFtXREW-WGo&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-10 (Sun, 10 May 2020)
Changed paths:
M Dockerfile
A docker/docker-jlabce.patch
A docker/jlab.sh
Log Message:
-----------
Fix to the jlab.sh script that works in existing environments
When using singularity we don't call JLab CE's jlab.sh with an
empty environment (nor do we want to, we need $DISPLAY, for one).
This fixes the tcsh to bash translator for environment variables
to be more accommodating of environments with existing functions
(bash completion, module system, spack, you name it).
Commit: 583620d89e927f094c1294a30bdd0a24654a10f7
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_583620d89e927f094c1294a30bdd0a24654a10f7&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=bqwj-yiic3OWAEhiYzY5qZZmoRShxe91CCfEJlmrkKQ&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-10 (Sun, 10 May 2020)
Changed paths:
R docker/docker-jlabce.patch
Log Message:
-----------
Don't need the patch when shipping the full file.
Commit: a3289ad7fff45bbafb0055238874736546d1888c
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_a3289ad7fff45bbafb0055238874736546d1888c&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=hdMDZkjMH1siu3gnVbKwOPsiq3zmBfoBnypv4budnGM&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-10 (Sun, 10 May 2020)
Changed paths:
M .dockerignore
Log Message:
-----------
Use more sensible docker ignore, don't copy GBs of root files...
Commit: 8e86fa979b876352bdf11a61e3607d58947e4a51
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_8e86fa979b876352bdf11a61e3607d58947e4a51&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=ObrfJt9riFA9EZsJSvg4xtBkSOrg3BqDaCeLvSjEW9E&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-10 (Sun, 10 May 2020)
Changed paths:
M docker/jlab.sh
Log Message:
-----------
csh uses setenv, not set
Commit: 1f1a711db4d21ddedec5cb4c1552bc6bb1f3826b
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_1f1a711db4d21ddedec5cb4c1552bc6bb1f3826b&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=wm9Xp8ZRh9nhoQIMVpCxExBKDCvcGHWGhXTVoZ45208&e=
Author: Wouter Deconinck <wdconinc at gmail.com>
Date: 2020-05-11 (Mon, 11 May 2020)
Changed paths:
M scripts/tests/targz_macros.sh
M scripts/tests/test_geometries.sh
M scripts/tests/test_macros.sh
M scripts/tests/watermark.sh
Log Message:
-----------
No branch name when .git is in .dockerignore, use HEAD instead
Commit: a3d1c0fe1f87ae5432a6cb1ee81f5bc6bf21d225
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_commit_a3d1c0fe1f87ae5432a6cb1ee81f5bc6bf21d225&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=F7qM8OoQ8YAAKRMEy6NDA7XUpUyYm0Abx6sWnhrMP2E&e=
Author: Wouter Deconinck <wdconinc at jlab.org>
Date: 2020-05-11 (Mon, 11 May 2020)
Changed paths:
M .dockerignore
M Dockerfile
A cmake/templates/remoll.csh.in
A cmake/templates/remoll.sh.in
A docker/jlab.sh
M scripts/tests/targz_macros.sh
M scripts/tests/test_geometries.sh
M scripts/tests/test_macros.sh
M scripts/tests/watermark.sh
Log Message:
-----------
Merge pull request #342 from JeffersonLab/bugfix-docker-run-in-pwd
Bugfix: Run docker run in pwd, not in /jlab/remoll, when using singularity
Compare: https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_JeffersonLab_remoll_compare_35d652e8facc...a3d1c0fe1f87&d=DwICaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=-0uahHXTLsQsllHBZNHgOynLaY6DUxqehsUJ91-BlNY&m=d9NF9ZQtdyKDcXB16hJAiBSrBtZbG2q_jGjTA_buOXY&s=Q-mC4N3kX6fz5jdsGzWLL3NkPRtv47SOqmznz-o3NDQ&e=
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