<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Hi Maurizio, <div class=""><br class=""></div><div class="">I am running some simulations for Omega reaction (ep—>e’ K+ K+ K0 Omega-) following the latest instructions sent out by Latifa. </div><div class="">I have generated 20,000 events using my own generator, where I leave the K0 and Omega- intact — wanted GEMC to decay them.</div><div class=""><br class=""></div><div class="">When I process these events, through GEMC I get A LOT of warnings like:</div><div class=""><br class=""></div><div class=""><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class=""> Warning: process name xi0Inelastic not catalogued.</font></span></div></div><div class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class=""> Warning: process name omega-Inelastic not catalogued.</font></span></div><div class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><br class=""></span></div></span></div><div class="">As well as some occasional Exceptions:</div><div class=""><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class="">-------- WWWW ------- G4Exception-START -------- WWWW -------</font></span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class="">*** G4Exception : GeomNav1002</font></span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class=""> issued by : G4Navigator::ComputeStep()</font></span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class="">Track stuck or not moving.</font></span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class=""> Track stuck, not moving for 10 steps</font></span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class=""> in volume -mirror_1_sector1_2- at point (245.927,-4.41651e-08,1550.14) (local point (63.6506,-1483.22,509.335))</font></span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class=""> direction: (-0.618218,-0.619247,0.484086) (local direction: (0.43814,-0.611025,-0.659304)).</font></span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class=""> Potential geometry or navigation problem !</font></span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class=""> Trying pushing it of 1e-07 mm ...Potential overlap in geometry!</font></span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255); min-height: 13px;" class=""><font color="#0433ff" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class=""></font></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class="">*** This is just a warning message. ***</font></span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class="">-------- WWWW -------- G4Exception-END --------- WWWW ———</font></span></div></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><br class=""></span></div><div style="margin: 0px; line-height: normal; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">When I run CLARA locally on the hipo file, it takes clara about 5 seconds to finish, but not out_* file is created. </span></div><div style="margin: 0px; line-height: normal; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">When I run CLARA on farm I get the following error and the job is submitted:</span></div><div style="margin: 0px; line-height: normal; background-color: rgb(255, 255, 255);" class=""><span style="font-variant-ligatures: no-common-ligatures;" class=""><div style="font-family: Menlo; font-size: 11px; margin: 0px; line-height: normal; color: rgb(195, 55, 32);" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><b class="">mkdir: cannot create directory ‘/tmp//UserKeystoreManager/2017.08.18’: Permission denied</b></span></div><div style="font-family: Menlo; font-size: 11px; margin: 0px; line-height: normal; color: rgb(175, 173, 36);" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">Logging to .UserKeystoreManager.2017.08.18.05.13.53.Qur.log</span></div><div style="font-family: Menlo; font-size: 11px; margin: 0px; line-height: normal;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class="">Parsing script ... (it may take while)</font></span></div><div style="font-family: Menlo; font-size: 11px; margin: 0px; line-height: normal;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><font color="#0433ff" class=""><jsub><request><index>21852552</index><jobIndex>42213958</jobIndex></request></jsub></font></span></div><div style="font-family: Menlo; font-size: 11px; margin: 0px; line-height: normal;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><br class=""></span></div><div style="margin: 0px; line-height: normal;" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">Most of the times I dont get any output file. I browsed quickly through the GEMC file and out_clara file (using allhipo2root conversion — for the GEMC file I looked at the file after it was converted to hipo with the correct fields):</span></div><div style="margin: 0px; line-height: normal;" class=""><span style="font-variant-ligatures: no-common-ligatures;" class="">Files are under: </span><span style="font-family: Menlo; font-size: 11px;" class="">/volatile/clas12/nicholas</span> </div><div style="margin: 0px; line-height: normal;" class="">Looking at the MC bank, the GEMC files has 99995 entries (I generated 20000 with 5 particles in the final state, so it should have had 100000 entries). </div><div style="margin: 0px; line-height: normal;" class="">The reconstructed hipo file however, has only 410 entries…</div><div style="margin: 0px; line-height: normal;" class=""><br class=""></div><div style="margin: 0px; line-height: normal;" class="">Any idea what I might be doing wrong? I am attaching the full chain of my work. </div><div style="margin: 0px; line-height: normal;" class=""><br class=""></div><div style="margin: 0px; line-height: normal;" class=""><br class=""></div><div style="margin: 0px; line-height: normal;" class="">
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<div class="column"><p class=""><font face="Arial" class=""><span style="font-size: 14px;" class="">Get gcard from:</span></font></p>
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<li class=""><p class=""><font face="Arial" class=""><span style="font-size: 14px;" class=""> <span style="color: rgb(5, 99, 193);" class=""><a href="https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_gemc_clas12Tags_tree_master_4a.2.0&d=DwMFaQ&c=lz9TcOasaINaaC3U7FbMev2lsutwpI4--09aP8Lu18s&r=2lHnEgsB2mThSt78tsjI1-TWXdDzoLyKfYN4jPZYYZ8&m=eKzwbv41N3iENzgIoNMj079ojP7vQ4nVhH1KIP3RQJM&s=qS5m61jnvIsA7Xr_Vt4XXlY7KWq9O70dCsrsg9QrdyA&e=" class="">https://github.com/gemc/clas12Tags/tree/master/4a.2.0</a></span><span style="color: rgb(5, 99, 193);" class=""> </span></span></font></p>
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</div><p class=""><font face="Arial" class=""><span style="font-size: 14px;" class="">source /group/clas12/gemc/environment.csh 4a.2.0<br class="">
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<div class="column"><p class=""><font face="Arial" class=""><span style="font-size: 14px;" class="">gemc clas12_FS1.gcard -INPUT_GEN_FILE="LUND, HaspGen_Omega.lund" -OUTPUT="evio, gemc_Omega_FS1.evio" <span style="color: rgb(255, 0, 0);" class="">-RUNNO=11 </span>-USE_GUI=0 </span></font></p><div class=""><font face="Arial" class=""><span style="font-size: 14px;" class="">setenv CLARA_HOME $PWD/myClara/ </span></font></div><div class=""><div class="page" title="Page 3"><div class="layoutArea"><div class="column"><p class=""><font face="Arial" class=""><span style="font-size: 14px;" class="">./install-claracre-clas.sh -v 4a.7.5</span></font></p><p class=""><font face="Arial" class=""><span style="font-size: 14px;" class="">
setenv COATJAVA $CLARA_HOME/plugins/clas12/ </span></font></p><p class=""><font face="Arial" class=""><span style="font-size: 14px;" class="">$COATJAVA/bin/evio2hipo -r 11 -t 0.75 -s 0.6 -o gemc_Omega_FS1.hipo gemc_Omega_FS1.evio </span></font></p><div class="">
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<div class="column"><p class=""><span style="font-size: 11.000000pt; font-family: 'ArialMT'" class="">$CLARA_HOME/bin/clara-shell</span></p><div class=""><font face="Arial" class=""><span style="font-size: 15px;" class="">source cook_FS1. clara</span></font></div><p class=""><span style="font-family: Menlo; font-size: 11px;" class="">////cook_FS1.clara///</span></p><p class=""><span style="font-family: Menlo; font-size: 11px;" class="">set inputDir /volatile/clas12/nicholas/COOKING/</span></p><p class=""><span style="font-family: Menlo; font-size: 11px;" class="">set outputDir /volatile/clas12/nicholas/COOKING/</span></p><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">set farm.disk 5</span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">set farm.time 1200</span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">set farm.os centos7</span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">set farm.track analysis</span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">set farm.memory 8</span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">set farm.cpu 4</span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">set threads 4</span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">set javaMemory 2</span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo; min-height: 13px;" class=""><span style="font-variant-ligatures: no-common-ligatures" class=""></span><br class=""></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">set session s_nicholas_cook</span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">set description d_nicholas_cook</span></div><div style="margin: 0px; font-size: 11px; line-height: normal; font-family: Menlo;" class=""><span style="font-variant-ligatures: no-common-ligatures" class="">set fileList /volatile/clas12/nicholas/COOKING/files_FS1.list</span></div><div class=""><span style="font-variant-ligatures: no-common-ligatures" class=""><br class=""></span></div>
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<div class="column"><p class=""><font face="Arial" class=""><span style="font-size: 15px;" class="">run local </span></font></p>
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</div></div><div class="">Thanks, </div><div class="">Nick</div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div><div class=""><br class=""></div>
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