[Clas_offline] user_ana

Will Phelps wphelps at jlab.org
Mon Apr 7 14:45:09 EDT 2014 

Hello everyone,
After discussion in the software meetings and testing by Nikolai the production build in /group/clas/builds has been updated to include changes to user_ana. The temporary test build will be erased shortly. 
-Will

On Mar 27, 2014, at 9:45 AM, Veronique Ziegler <ziegler at jlab.org> wrote:

> Hi, 
> 
>  the software meeting is at 11:00 am EST.  Talk to you then.
> Veronique.
> 
> ----- Original Message -----
> From: "Will Phelps" <wphelps at jlab.org>
> To: pivnyuk at jlab.org
> Cc: "clas offline" <clas_offline at jlab.org>
> Sent: Thursday, March 27, 2014 9:40:15 AM
> Subject: Re: [Clas_offline] user_ana
> 
> I would like to bring it up at the software meeting today. I would like to have a few more opinions on what should be done and how to proceed. It's today at 10:30am EST.
> 
> Also, fantastic quote! 
> -Will
> 
> On Mar 26, 2014, at 11:53 AM, Nikolai Pivnyuk <pivnyuk at jlab.org> wrote:
> 
>> Will, do you have any objection to what Silvia has suggested ?
>> 
>> "THE MAN WHO MAKES NO MISTAKES DOES NOT USUALLY MAKE ANYTHING"
>>                                                      PHELPS
>> 
>>> Hi Will,
>>> Good to know that someone still has claslib permissions :-)
>>> If I can give my opinion, I think that the specif fix under discussion
>>> (the one that allows user_ana to be run on the batch farm) should be
>>> included without further doubts in the official executable, as the one
>>> there right now is basically useless, working only interactively. You
>>> should just make sure that the only change in the packages since the last
>>> build was that one.
>>> Regards and thanks a lot for taking care of this.
>>> Silvia
>>> 
>>> 
>>> Sent from my iPhone
>>> 
>>>> On 26/mar/2014, at 16:26, Will Phelps <wphelps at jlab.org> wrote:
>>>> 
>>>> Hello Nikolai,
>>>> I am the CLAS librarian and I am discussing what to do with the builds
>>>> with Johann and Harut. So far it looks like I will not be changing the
>>>> /group/clas/builds/ production build until everyone has been notified. I
>>>> will create a separate build like /group/clas/builds/build_03_26_14/ or
>>>> something similar for collaborators to test out before changing the
>>>> production build. Any suggestions are welcome.
>>>> -Will
>>>> 
>>>>> On Mar 26, 2014, at 11:20 AM, Nikolai Pivnyuk <pivnyuk at jlab.org> wrote:
>>>>> 
>>>>> 
>>>>> 
>>>>>> I don't have access to the claslib account anymore. I'm not sure who
>>>>>> does.
>>>>> 
>>>>> 
>>>>> 
>>>>> Does anybody know "who does" ?
>>>>> 
>>>>> 
>>>>> 
>>>>>> If anyone wants to build the fixed version into /group/clas/builds,
>>>>>> they
>>>>>> could first log into ifarm1101 as claslib and run this:
>>>>>> 
>>>>>> cd /group/clas/builds/src/clas-trunk
>>>>>> svn up
>>>>>> scons -j32 install
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> -- Johann <https://sites.google.com/site/theodoregoetz/>
>>>>>> 
>>>>>> 
>>>>>> On Tue, Mar 25, 2014 at 4:25 PM, Francois-Xavier Girod
>>>>>> <fxgirod at jlab.org>wrote:
>>>>>> 
>>>>>>> 
>>>>>>> One would think that
>>>>>>> /group/clas/builds/bin/user_ana
>>>>>>> should be consistent with
>>>>>>> /group/clas/builds/src/clas-trunk/reconstruction/recsis/retcl_yield.F
>>>>>>> but this source file is not consistent with the svn repository.
>>>>>>> 
>>>>>>> /group/clas/builds/ is supposed to be updated manually (?).
>>>>>>> 
>>>>>>> Best regards,
>>>>>>> FX
>>>>>>> 
>>>>>>> ----- Original Message -----
>>>>>>> From: "Nikolai Pivnyuk" <pivnyuk at jlab.org>
>>>>>>> To: "Johann Goetz" <theodore.goetz at gmail.com>
>>>>>>> Cc: "clas offline" <clas_offline at jlab.org>
>>>>>>> Sent: Tuesday, March 25, 2014 4:13:27 PM
>>>>>>> Subject: Re: [Clas_offline] user_ana
>>>>>>> 
>>>>>>> Johann,
>>>>>>> 
>>>>>>> ???????
>>>>>>> 
>>>>>>> pivnyuk at ifarm1102:~>ll /group/clas/builds/bin/user_ana
>>>>>>> -rwxrwxr-x 1 claslib clasdev 4225915 Dec 18 14:33
>>>>>>> /group/clas/builds/bin/user_ana
>>>>>>> 
>>>>>>> 
>>>>>>>> This modification has been in the SVN repository since January,
>>>>>>>> 2014.
>>>>>>>> https://jlabsvn.jlab.org/svnroot/clas/trunk
>>>>>>>> 
>>>>>>>> -- Johann <https://sites.google.com/site/theodoregoetz/>
>>>>>>>> 
>>>>>>>> 
>>>>>>>>> On Tue, Mar 25, 2014 at 2:32 PM, Silvia Niccolai <silvia at jlab.org>
>>>>>>>> wrote:
>>>>>>>> 
>>>>>>>>> Hello all,
>>>>>>>>> Could this "trick" be implemented in the official clas-trunk, so
>>>>>>>>> that
>>>>>>>>> people don't have to check out, modify this routine and recompile
>>>>>>>>> everything?
>>>>>>>>> This issue has been known since about last summer...
>>>>>>>>> Thanks
>>>>>>>>> Silvia
>>>>>>>>> 
>>>>>>>>> Sent from my iPhone
>>>>>>>>> 
>>>>>>>>>> On 25/mar/2014, at 19:24, KiJun Park <parkkj at jlab.org> wrote:
>>>>>>>>>> 
>>>>>>>>>> Hi,
>>>>>>>>>> 
>>>>>>>>>> Perhaps your problem is related with source code not your input
>>>>>>>>>> bos
>>>>>>>>> file.
>>>>>>>>>> Many people already noticed this problem without knowing the
>>>>>>> reason.
>>>>>>>>>> (You may see lots of communications in CLAS_OFFLINE account)
>>>>>>>>>> The ifarm1102 and batch-farm are identical machines
>>>>>>> (CENTOS6.2/64bit),
>>>>>>>>> calling same LIBs,... etc.
>>>>>>>>>> No one really does not know why the error is occurred in only
>>>>>>>>>> batch
>>>>>>>>> mode, meantime an interactive mode is working fine.
>>>>>>>>>> 
>>>>>>>>>> So far, there is a trick which is so far working.
>>>>>>>>>> You may try this too.
>>>>>>>>>> But this is not an ultimate solution.
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> The source code in "retcl_yield.F" has
>>>>>>>>>> ---------------------------------------------------------
>>>>>>>>>> c
>>>>>>>>>> c look at the terminal input
>>>>>>>>>> c
>>>>>>>>>> IF (LINTER) THEN
>>>>>>>>>> call asynck_c(nbyt)
>>>>>>>>>> else
>>>>>>>>>> nbyt = 1
>>>>>>>>>> endif
>>>>>>>>>> ---------------------------------------------------------
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>>>>>> change this "nbyt = 1" to  "nbyt = 0"
>>>>>>>>>> 
>>>>>>>>>> I know, this does not make any sense.
>>>>>>>>>> Because in principle, the loop is going to be infinite when  "nbyt
>>>>>>> =
>>>>>>>>> 0"
>>>>>>>>> is engaged.
>>>>>>>>>> 
>>>>>>>>>>     IF (LINTER) THEN
>>>>>>>>>>         call asynck_c(nbyt)
>>>>>>>>>>     else
>>>>>>>>>>        nbyt = 1
>>>>>>>>>>     endif
>>>>>>>>>> 
>>>>>>>>>> re-compile it and submit your job.
>>>>>>>>>> good luck.
>>>>>>>>>> 
>>>>>>>>>> Sincerely yours,
>>>>>>>>>> Kijun
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> 
>>>>>>>>>> ----- Original Message -----
>>>>>>>>>> From: "Nikolai Pivnyuk" <pivnyuk at jlab.org>
>>>>>>>>>> To: "clas offline" <clas_offline at jlab.org>
>>>>>>>>>> Sent: Tuesday, March 25, 2014 2:14:50 PM
>>>>>>>>>> Subject: [Clas_offline] user_ana
>>>>>>>>>> 
>>>>>>>>>> Dear CLAS offliners,
>>>>>>>>>> 
>>>>>>>>>> I have a problem with running user_ana on batch farm nodes.
>>>>>>>>>> To launch the job I currently use the same scripts which I have
>>>>>>> used a
>>>>>>>>> few
>>>>>>>>>> years ago without any problem. These scripts are
>>>>>>>>>> /volatile/clas/clasg10/pivnyuk/g10/mc/batch_pipp/send_to_farm.pl
>>>>>>>>>> and
>>>>>>>>>> /volatile/clas/clasg10/pivnyuk/g10/mc/batch_pipp/runmc.pl
>>>>>>>>>> In runmc.pl see just only quite small "recsis" block of the
>>>>>>>>>> script.
>>>>>>>>>> ---------------------------------------------------------------------
>>>>>>>>>> The problem looks likely as the input file
>>>>>>> /volatile/clas/clasg10/pivnyuk/g10/mc/outdir_pimi_p_resc_dc_0.02_de_0.08/eg_2.90/gpp0004.bos
>>>>>>>>>> is invisible for the user_ana.
>>>>>>>>>> It is just only my impression. I'm not absolutely sure about that.
>>>>>>>>>> ----------------------------------------------------------------------
>>>>>>>>>> Processing the same gpp0004.bos with user_ana but in INTERACTIVE
>>>>>>> MODE
>>>>>>>>> is
>>>>>>>>>> absolutely OK. No problem.
>>>>>>> -----------------------------------------------------------------------
>>>>>>>>>> More details (.tcl and output .log files etc.) are in the
>>>>>>> "user_ana"
>>>>>>>>>> attached file.
>>>>>>> ------------------------------------------------------------------------
>>>>>>>>>> Could somebody kindly have a look on my stuff ?
>>>>>>>>>> Thanks in advance,
>>>>>>>>>> Nikolai
>>>>>>>>>> _______________________________________________
>>>>>>>>>> Clas_offline mailing list
>>>>>>>>>> Clas_offline at jlab.org
>>>>>>>>>> https://mailman.jlab.org/mailman/listinfo/clas_offline
>>>>>>>>>> 
>>>>>>>>>> --
>>>>>>>>>> ---------------------------------------******
>>>>>>>>>> Dr. Kijun Park
>>>>>>>>>> Physics Dept. Old Dominion University
>>>>>>>>>> Thomas Jefferson National Accelerator Facility
>>>>>>>>>> Suit 5 Room 12_1/A102
>>>>>>>>>> 12000 Jefferson Ave.
>>>>>>>>>> Newport News VA 23606
>>>>>>>>>> Phone 757-269-6989
>>>>>>>>>> 
>>>>>>>>>> _______________________________________________
>>>>>>>>>> Clas_offline mailing list
>>>>>>>>>> Clas_offline at jlab.org
>>>>>>>>>> https://mailman.jlab.org/mailman/listinfo/clas_offline
>>>>>>>>> 
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