[Clas_offline] user_ana

Will Phelps wphelps at jlab.org
Wed Mar 26 11:26:35 EDT 2014 

Hello Nikolai,
I am the CLAS librarian and I am discussing what to do with the builds with Johann and Harut. So far it looks like I will not be changing the /group/clas/builds/ production build until everyone has been notified. I will create a separate build like /group/clas/builds/build_03_26_14/ or something similar for collaborators to test out before changing the production build. Any suggestions are welcome. 
-Will

On Mar 26, 2014, at 11:20 AM, Nikolai Pivnyuk <pivnyuk at jlab.org> wrote:

> 
> 
>> I don't have access to the claslib account anymore. I'm not sure who does.
> 
> 
> 
> Does anybody know "who does" ?
> 
> 
> 
>> If anyone wants to build the fixed version into /group/clas/builds, they
>> could first log into ifarm1101 as claslib and run this:
>> 
>> cd /group/clas/builds/src/clas-trunk
>> svn up
>> scons -j32 install
>> 
>> 
>> 
>> 
>> -- Johann <https://sites.google.com/site/theodoregoetz/>
>> 
>> 
>> On Tue, Mar 25, 2014 at 4:25 PM, Francois-Xavier Girod
>> <fxgirod at jlab.org>wrote:
>> 
>>> 
>>> One would think that
>>> /group/clas/builds/bin/user_ana
>>> should be consistent with
>>> /group/clas/builds/src/clas-trunk/reconstruction/recsis/retcl_yield.F
>>> but this source file is not consistent with the svn repository.
>>> 
>>> /group/clas/builds/ is supposed to be updated manually (?).
>>> 
>>> Best regards,
>>> FX
>>> 
>>> ----- Original Message -----
>>> From: "Nikolai Pivnyuk" <pivnyuk at jlab.org>
>>> To: "Johann Goetz" <theodore.goetz at gmail.com>
>>> Cc: "clas offline" <clas_offline at jlab.org>
>>> Sent: Tuesday, March 25, 2014 4:13:27 PM
>>> Subject: Re: [Clas_offline] user_ana
>>> 
>>> Johann,
>>> 
>>>  ???????
>>> 
>>> pivnyuk at ifarm1102:~>ll /group/clas/builds/bin/user_ana
>>> -rwxrwxr-x 1 claslib clasdev 4225915 Dec 18 14:33
>>> /group/clas/builds/bin/user_ana
>>> 
>>> 
>>>> This modification has been in the SVN repository since January, 2014.
>>>> https://jlabsvn.jlab.org/svnroot/clas/trunk
>>>> 
>>>> -- Johann <https://sites.google.com/site/theodoregoetz/>
>>>> 
>>>> 
>>>> On Tue, Mar 25, 2014 at 2:32 PM, Silvia Niccolai <silvia at jlab.org>
>>> wrote:
>>>> 
>>>>> Hello all,
>>>>> Could this "trick" be implemented in the official clas-trunk, so that
>>>>> people don't have to check out, modify this routine and recompile
>>>>> everything?
>>>>> This issue has been known since about last summer...
>>>>> Thanks
>>>>> Silvia
>>>>> 
>>>>> Sent from my iPhone
>>>>> 
>>>>>> On 25/mar/2014, at 19:24, KiJun Park <parkkj at jlab.org> wrote:
>>>>>> 
>>>>>> Hi,
>>>>>> 
>>>>>> Perhaps your problem is related with source code not your input bos
>>>>> file.
>>>>>> Many people already noticed this problem without knowing the
>>> reason.
>>>>>> (You may see lots of communications in CLAS_OFFLINE account)
>>>>>> The ifarm1102 and batch-farm are identical machines
>>> (CENTOS6.2/64bit),
>>>>> calling same LIBs,... etc.
>>>>>> No one really does not know why the error is occurred in only batch
>>>>> mode, meantime an interactive mode is working fine.
>>>>>> 
>>>>>> So far, there is a trick which is so far working.
>>>>>> You may try this too.
>>>>>> But this is not an ultimate solution.
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> The source code in "retcl_yield.F" has
>>>>>> ---------------------------------------------------------
>>>>>> c
>>>>>> c look at the terminal input
>>>>>> c
>>>>>> IF (LINTER) THEN
>>>>>> call asynck_c(nbyt)
>>>>>> else
>>>>>> nbyt = 1
>>>>>> endif
>>>>>> ---------------------------------------------------------
>>>>>> 
>>>>>> 
>>>>>>>>>> change this "nbyt = 1" to  "nbyt = 0"
>>>>>> 
>>>>>> I know, this does not make any sense.
>>>>>> Because in principle, the loop is going to be infinite when  "nbyt
>>> =
>>>>> 0"
>>>>> is engaged.
>>>>>> 
>>>>>>       IF (LINTER) THEN
>>>>>>           call asynck_c(nbyt)
>>>>>>       else
>>>>>>          nbyt = 1
>>>>>>       endif
>>>>>> 
>>>>>> re-compile it and submit your job.
>>>>>> good luck.
>>>>>> 
>>>>>> Sincerely yours,
>>>>>> Kijun
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> ----- Original Message -----
>>>>>> From: "Nikolai Pivnyuk" <pivnyuk at jlab.org>
>>>>>> To: "clas offline" <clas_offline at jlab.org>
>>>>>> Sent: Tuesday, March 25, 2014 2:14:50 PM
>>>>>> Subject: [Clas_offline] user_ana
>>>>>> 
>>>>>> Dear CLAS offliners,
>>>>>> 
>>>>>> I have a problem with running user_ana on batch farm nodes.
>>>>>> To launch the job I currently use the same scripts which I have
>>> used a
>>>>> few
>>>>>> years ago without any problem. These scripts are
>>>>>> /volatile/clas/clasg10/pivnyuk/g10/mc/batch_pipp/send_to_farm.pl
>>>>>> and
>>>>>> /volatile/clas/clasg10/pivnyuk/g10/mc/batch_pipp/runmc.pl
>>>>>> In runmc.pl see just only quite small "recsis" block of the script.
>>>>>> ---------------------------------------------------------------------
>>>>>> The problem looks likely as the input file
>>>>>> 
>>>>> 
>>> /volatile/clas/clasg10/pivnyuk/g10/mc/outdir_pimi_p_resc_dc_0.02_de_0.08/eg_2.90/gpp0004.bos
>>>>>> is invisible for the user_ana.
>>>>>> It is just only my impression. I'm not absolutely sure about that.
>>>>>> ----------------------------------------------------------------------
>>>>>> Processing the same gpp0004.bos with user_ana but in INTERACTIVE
>>> MODE
>>>>> is
>>>>>> absolutely OK. No problem.
>>>>>> 
>>> -----------------------------------------------------------------------
>>>>>> More details (.tcl and output .log files etc.) are in the
>>> "user_ana"
>>>>>> attached file.
>>>>>> 
>>> ------------------------------------------------------------------------
>>>>>> Could somebody kindly have a look on my stuff ?
>>>>>> Thanks in advance,
>>>>>> Nikolai
>>>>>> _______________________________________________
>>>>>> Clas_offline mailing list
>>>>>> Clas_offline at jlab.org
>>>>>> https://mailman.jlab.org/mailman/listinfo/clas_offline
>>>>>> 
>>>>>> --
>>>>>> ---------------------------------------******
>>>>>> Dr. Kijun Park
>>>>>> Physics Dept. Old Dominion University
>>>>>> Thomas Jefferson National Accelerator Facility
>>>>>> Suit 5 Room 12_1/A102
>>>>>> 12000 Jefferson Ave.
>>>>>> Newport News VA 23606
>>>>>> Phone 757-269-6989
>>>>>> 
>>>>>> _______________________________________________
>>>>>> Clas_offline mailing list
>>>>>> Clas_offline at jlab.org
>>>>>> https://mailman.jlab.org/mailman/listinfo/clas_offline
>>>>> 
>>>>> _______________________________________________
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