<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>If this isn't being done already, when a user has built a working, vetted version of the CLAS software from a previous experiment on CentOS 6.2, perhaps we should submit our environment/code/build-instructions to the offline group. Then they could make this build themselves in /group/clas/builds/. </div><div><br></div><div>This would allow the collaboration to have centrally located versions of validated software for previous experiments (e.g. for simulations, in case need to recook, etc.), instead of the current model of each person trying to fend for themselves. This is especially a problem when the software experts for a given experiment have moved on to other projects. This would make the CLAS software more easily maintainable for the next system upgrade. </div><div><br></div><div>Is this build-collection project one that the offline group would be willing to do? </div><div><br></div><div> - Paul</div><br><div><div>On Feb 12, 2014, at 12:47 PM, Jixie Zhang wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div dir="ltr"><div><div><div>Hi, Nevzat,<br></div> There are many more things you need to modify before <span style="font-size:11pt;font-family:"Calibri","sans-serif";color:rgb(31,73,125)">release-4-15</span> finally <br>
</div>get compiled. Many files need to change the header and most dependent libs<br></div><div>have a newer version, and also to the cernlib. And some packages just can not<br></div><div>be compiled for other reasons. <br>
</div><div><br></div><div> I happened to went through this long time ago and have a compiled version here:<br>/u/home/jixie/clas/builds/release-4-15<br><br></div><div>you can copy this one and use it.<br></div><div>Note that I have already rewrite the scritpt which define 'OS_NAME'. <br>
</div><div><br></div><div>If you still need to compile your version, do a diff between mine and yours, then start<br></div><div>from there.<br><br></div><div>Hope it help.<br></div><div><br></div> <br></div><div class="gmail_extra">
<br><br><div class="gmail_quote">On Tue, Feb 11, 2014 at 11:36 PM, Nevzat Guler <span dir="ltr"><<a href="mailto:nguler@jlab.org" target="_blank">nguler@jlab.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div link="blue" vlink="purple" lang="EN-US"><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Thank you Paul, that solved the problem once I set the env variable (which I did not have)<u></u><u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">setenv MYSQL_INCLUDE_PATH /usr/include/mysql/<u></u><u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">I will put this into my .cshrc.<u></u><u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Now I passed the mysql error but I encountered the following error:<u></u><u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[2]: Entering directory `/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/helcor_eg6'<u></u><u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[2]: *** No rule to make target `lib'. Stop.<u></u><u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[2]: Leaving directory `/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/helcor_eg6'<u></u><u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[1]: *** [helcor_eg6] Error 2<u></u><u></u></span></p><div class=""><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[1]: Leaving directory `/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages'<u></u><u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make: *** [lib] Error 2<u></u><u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
</div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Any suggestion on this one? I don’t have any idea what to do here..<u></u><u></u></span></p><p class="MsoNormal">
<span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Just for the record, I had to make various changes to overcome number of arithmetic overflow errors to reach to this point..<u></u><u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Best regards, - NG<u></u><u></u></span></p><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p><div><div style="border:none;border-top:solid #e1e1e1 1.0pt;padding:3.0pt 0in 0in 0in"><p class="MsoNormal"><b><span style="font-size:11.0pt;font-family:"Calibri","sans-serif"">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri","sans-serif""> Paul Mattione [mailto:<a href="mailto:pmatt@jlab.org" target="_blank">pmatt@jlab.org</a>] <br>
<b>Sent:</b> Tuesday, February 11, 2014 11:14 PM<br><b>To:</b> Nevzat Guler<br><b>Cc:</b> 'CLAS Offline'<br><b>Subject:</b> Re: [Clas_offline] mysql.h<u></u><u></u></span></p></div></div><div><div class="h5"><p class="MsoNormal">
<u></u> <u></u></p><div><p class="MsoNormal">On ifarm1102, this file is located in:<u></u><u></u></p></div><div><p class="MsoNormal"><u></u> <u></u></p></div><div><p class="MsoNormal">/usr/include/mysql/<u></u><u></u></p>
</div><div><p class="MsoNormal"><u></u> <u></u></p></div><div><p class="MsoNormal">Assuming there are no eccentricities in the eg1b software, make sure that your $MYSQL_INCLUDE_PATH environment variable is pointing to this directory. <u></u><u></u></p>
</div><div><p class="MsoNormal"><u></u> <u></u></p></div><div><p class="MsoNormal"> - Paul<u></u><u></u></p></div><p class="MsoNormal"><u></u> <u></u></p><div><div><p class="MsoNormal">On Feb 11, 2014, at 10:52 PM, Nevzat Guler wrote:<u></u><u></u></p>
</div><p class="MsoNormal"><br><br><u></u><u></u></p><blockquote style="margin-top:5.0pt;margin-bottom:5.0pt"><div><div><div><div><p class="MsoNormal"><span style="color:#1f497d">Dear CLAS offline members,</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">I am trying to recompile my clas libraries for Linux64RHEL5. During compilation, I encounter some error related to a missing file mysql.h in calib_connect.c</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">I am printing the part of the message below</span><u></u><u></u></p></div><div><p class="MsoNormal">
<span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">I appreciate any suggestion on the nature of this error message and how to fix it.</span><u></u><u></u></p></div><div><p class="MsoNormal">
<span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Thanks, - NG</span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"> </span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"> </span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">ar: creating /home/nguler/eg1b/clas/builds/release-4-15/lib/Linux64RHEL5/libana.a</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[2]: Leaving directory `/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/ana'</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">if test -d caldb; then \</span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"> make -e -C caldb lib; \</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"> fi</span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[2]: Entering directory `/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/caldb'</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make -C Map lib</span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[3]: Entering directory `/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/caldb/Map'</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/cms/Makefile:661: depends/Linux64RHEL5/calib_connect.d: No such file or directory</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/cms/Makefile:661: depends/Linux64RHEL5/calib_disconnect.d: No such file or directory</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/cms/Makefile:661: depends/Linux64RHEL5/calib_get_char.d: No such file or directory</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/cms/Makefile:661: depends/Linux64RHEL5/calib_get_float.d: No such file or directory</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/cms/Makefile:661: depends/Linux64RHEL5/calib_get_int.d: No such file or directory</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/cms/Makefile:661: depends/Linux64RHEL5/calib_put.d: No such file or directory</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/cms/Makefile:661: depends/Linux64RHEL5/calib_stat_item.d: No such file or directory</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/cms/Makefile:661: depends/Linux64RHEL5/calib_tcl_init.d: No such file or directory</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/cms/Makefile:661: depends/Linux64RHEL5/Map_wrap.d: No such file or directory</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/cms/Makefile:664: depends/Linux64RHEL5/calib_test.dd: No such file or directory</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Makefile: making dependency file for calib_test.c</span><u></u><u></u></p></div><div><p class="MsoNormal">
<span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_test.c:8:19: error: mysql.h: No such file or directory</span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Makefile: making dependency file for Map_wrap.c</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Makefile: making dependency file for calib_tcl_init.c</span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Makefile: making dependency file for calib_stat_item.c</span><u></u><u></u></p></div><div><p class="MsoNormal">
<span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_stat_item.c:10:19: mysql.h: No such file or directory</span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Makefile: making dependency file for calib_put.c</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_put.c:11:19: mysql.h: No such file or directory</span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Makefile: making dependency file for calib_get_int.c</span><u></u><u></u></p></div><div><p class="MsoNormal">
<span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_get_int.c:10:19: mysql.h: No such file or directory</span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Makefile: making dependency file for calib_get_float.c</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_get_float.c:11:19: mysql.h: No such file or directory</span><u></u><u></u></p></div>
<div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Makefile: making dependency file for calib_get_char.c</span><u></u><u></u></p></div><div><p class="MsoNormal">
<span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_get_char.c:11:19: mysql.h: No such file or directory</span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Makefile: making dependency file for calib_disconnect.c</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_disconnect.c:8:19: mysql.h: No such file or directory</span><u></u><u></u></p></div>
<div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">Makefile: making dependency file for calib_connect.c</span><u></u><u></u></p></div><div><p class="MsoNormal">
<span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_connect.c:10:19: mysql.h: No such file or directory</span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[3]: Leaving directory `/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/caldb/Map'</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[3]: Entering directory `/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/caldb/Map'</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">gcc -O3 -m64 -fPIC -DLinux -DLinux64 -fPIC \</span><u></u><u></u></p></div><div><p class="MsoNormal">
<span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"> -I -I. -I./ -I/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/include -I/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/inc_derived -I/usr/include -I/usr/X11R6/include -c \</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"> calib_connect.c -o /home/nguler/eg1b/clas/builds/release-4-15/obj/Linux64RHEL5/Map/calib_connect.o</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_connect.c:10:19: error: mysql.h: No such file or directory</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">In file included from calib_connect.c:11:</span><u></u><u></u></p></div><div><p class="MsoNormal">
<span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/include/calib_manager.h:51: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'mysql'</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_connect.c:18: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'mysql'</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_connect.c: In function 'calib_connect':</span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_connect.c:38: error: 'mysql' undeclared (first use in this function)</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_connect.c:38: error: (Each undeclared identifier is reported only once</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_connect.c:38: error: for each function it appears in.)</span><u></u><u></u></p></div>
<div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">calib_connect.c:111: error: 'MYSQL_OPT_COMPRESS' undeclared (first use in this function)</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[3]: *** [/home/nguler/eg1b/clas/builds/release-4-15/lib/Linux64RHEL5/libcaldbMap.a(calib_connect.o)] Error 1</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[3]: Leaving directory `/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/caldb/Map'</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[2]: *** [lib] Error 2</span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[2]: Leaving directory `/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages/caldb'</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[1]: *** [caldb] Error 2</span><u></u><u></u></p></div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make[1]: Leaving directory `/w/hallb/claseg1/nguler/Include/clas/builds/release-4-15/packages'</span><u></u><u></u></p>
</div><div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d">make: *** [lib] Error 2</span><u></u><u></u></p></div></div></div><p class="MsoNormal">_______________________________________________<br>
Clas_offline mailing list<br><a href="mailto:Clas_offline@jlab.org" target="_blank">Clas_offline@jlab.org</a><br><a href="https://mailman.jlab.org/mailman/listinfo/clas_offline" target="_blank">https://mailman.jlab.org/mailman/listinfo/clas_offline</a><u></u><u></u></p>
</div></blockquote></div><p class="MsoNormal"><u></u> <u></u></p></div></div></div></div><br>_______________________________________________<br>
Clas_offline mailing list<br>
<a href="mailto:Clas_offline@jlab.org">Clas_offline@jlab.org</a><br>
<a href="https://mailman.jlab.org/mailman/listinfo/clas_offline" target="_blank">https://mailman.jlab.org/mailman/listinfo/clas_offline</a><br></blockquote></div><br><br clear="all"><br>-- <br>With Best Regards,<br>Jixie Zhang<br>
757-269-7735 <br>_______________________________________________
</div>
</blockquote></div><br></body></html>