[Halld-offline] [EXTERNAL] auxilliary data file needed for running with HADR=4
Colin Gleason
gleasonc at jlab.org
Fri May 15 13:55:46 EDT 2020
Richard,
Thanks for the information. My CCDB_CONNECTION is the standard GlueX one
mysql://ccdb_user@hallddb.jlab.org/ccdb
CCDB_CONNECTION=mysql://ccdb_user@hallddb.jlab.org/ccdb
This is from the printenv statement of my environment and should be the
most up to date version, right? Is there something going on under the hood
that I'm missing?
On Fri, May 15, 2020 at 1:51 PM Richard Jones <richard.t.jones at uconn.edu>
wrote:
> Colin and Thomas,
>
> This is a known problem. You need to use an updated version of the ccdb
> geometry. Medium 11 is vacuum, defined as one of the elements of the
> periodic table. No wonder fluka does not know its properties. I changed
> vacuum to be defined as a mixture of hydrogen and nitrogen and updated the
> ccdb a few weeks back. The fix was back-dated to all runs since 2016.
> Please use an updated version of ccdb.
>
> -Richard
>
> On Fri, May 15, 2020 at 1:40 PM Colin Gleason <gleasonc at jlab.org> wrote:
>
>> *Message sent from a system outside of UConn.*
>>
>> I dumped the environments and they are located in this google doc:
>>
>>
>> https://docs.google.com/document/d/1VAbf8b9dhmzP0Ul0tgwmx5-BsXQyna7zlW6welDZlxA/edit?usp=sharing
>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__nam10.safelinks.protection.outlook.com_-3Furl-3Dhttps-253A-252F-252Fdocs.google.com-252Fdocument-252Fd-252F1VAbf8b9dhmzP0Ul0tgwmx5-2DBsXQyna7zlW6welDZlxA-252Fedit-253Fusp-253Dsharing-26data-3D02-257C01-257Crichard.t.jones-2540uconn.edu-257Cdf38f324a47d4c1f2feb08d7f8f70eff-257C17f1a87e2a254eaab9df9d439034b080-257C0-257C0-257C637251612309155975-26sdata-3D-252FVnrjMhc4DjZxFkEqWFQQoTAOQuKDmhXVveHpOzlxGI-253D-26reserved-3D0&d=DwMFaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=_p_Zf1fP8D9GtGtaEgIPjViLbHJLGv_RV32KAKGtMbE&m=Jt5DGYkn6UBnm7aaKn4QomtiJpeYlkhgLkhrYEJRDDY&s=ZkkchbqMAM01RQcYE3H3Xuh5OPnJqh6q5WnW-OMntu8&e=>
>>
>> On Fri, May 15, 2020 at 12:49 PM Thomas Britton <tbritton at jlab.org>
>> wrote:
>>
>>> Is there a material not found? Medium 11?
>>>
>>> Haven’t seen that before. Can you modify the MakeMC to dump your
>>> environment right before the block of logging info. Compare interactive to
>>> the one run on the farm. My guess is there is some small difference between
>>> the two....
>>>
>>> Thomas Britton
>>>
>>> On May 15, 2020, at 12:45 PM, Colin Gleason <gleasonc at jlab.org> wrote:
>>>
>>>
>>> No crashes- it runs fine without any errors. Logs are located at
>>> /volatile/halld/home/gleasonc/pippimeta/Simulation/2017-01_4.19_G3/HADR4_b/log.
>>> Looking carefully at onne of the log files, I find:
>>>>
>>>> settofg: RF reference plane set to 65.0000000 cm
>>>> 10 events simulated
>>>> 20 events simulated
>>>> 30 events simulated
>>>> 40 events simulated
>>>> 50 events simulated
>>>> 60 events simulated
>>>> 70 events simulated
>>>> 80 events simulated
>>>> 90 events simulated
>>>> 100 events simulated
>>>> 200 events simulated
>>>> MICAP GTMED: GEANT Medium 11 not found ==> STOP
>>>> RUNNING MCSMEAR
>>>> 0
>>>> 10000
>>>
>>> It looks like this is where things go wrong, as only ~250 of the ~2k
>>> generated events are getting processed.
>>>
>>> This issue, or STOP, does not appear when I run interactively. Running
>>> interactively would show:
>>>
>>>> **** NUMBER OF EVENTS PROCESSED = 10000
>>>>
>>>> **** RANDOM NUMBER GENERATOR AFTER LAST COMPLETE EVENT 2120846575
>>>> 460615182
>>>>
>>>> **** TIME TO PROCESS ONE EVENT IS = 0.0529 SECONDS
>>>>
>>>>
>>>>
>>>>
>>>> MZEND. Usage statistics for 2 dynamic stores.
>>>>
>>>>
>>>> Map of store 0 /GCBANK/
>>>>
>>>> ------------------------
>>>>
>>>>
>>>> Division Number of times
>>>>
>>>> Kind Max-size Garb-coll.
>>>>
>>>> Mode Position used allowed Wiped user auto
>>>> Pushd Redcd
>>>>
>>>>
>>>> 1 QDIV1 0 1 5203 0 4999968 0 0 0
>>>> 0 0
>>>>
>>>> 2 QDIV2 1 1 2267094 1019031 4999968 10000 0 0
>>>> 0 0
>>>>
>>>> 19 system 1 8 2341269 68180 4999968 0 0 0
>>>> 0 0
>>>>
>>>> 20 Constant 1 2 4999968 2635035 4000000 0 0 141 150
>>>> 0
>>>>
>>>>
>>>> Map of store 1 /PAWC/
>>>>
>>>> ------------------------
>>>>
>>>>
>>>> Division Number of times
>>>>
>>>> Kind Max-size Garb-coll.
>>>>
>>>> Mode Position used allowed Wiped user auto
>>>> Pushd Redcd
>>>>
>>>>
>>>> 1 QDIV1 0 1 2 0 4999585 0 0 0
>>>> 0 0
>>>>
>>>> 2 QDIV2 1 1 4998185 1100 4999585 0 0 0
>>>> 0 0
>>>>
>>>> 19 system 1 8 4998585 111 4999585 0 0 0
>>>> 0 0
>>>>
>>>> 20 HIGZ 0 4 4998585 0 5000000 0 0 0
>>>> 0 0
>>>>
>>>> RZEND. called for RZFILE
>>>>
>>>>
>>>>
>>>> ***** Normal exit from Hall D GEANT *****
>>>>
>>>>
>>>>
>>>> RUNNING MCSMEAR
>>>>
>>>> 2
>>>>
>>>> 10000
>>>>
>>>
>>>
>>> On Fri, May 15, 2020 at 12:34 PM Thomas Britton <tbritton at jlab.org>
>>> wrote:
>>>
>>>> This is tough. From MCwrapper’s POV it does nothing special when that
>>>> card is in any given state. Do you mean it crashes? We’ll need some stack
>>>> traces.
>>>>
>>>>
>>>>
>>>> Thomas Britton
>>>>
>>>> Staff Scientist, Scientific Computing
>>>>
>>>> Jefferson Lab
>>>>
>>>>
>>>>
>>>> *From: *Colin Gleason <gleasonc at jlab.org>
>>>> *Sent: *Friday, May 15, 2020 12:29 PM
>>>> *To: *Richard Jones <richard.t.jones at uconn.edu>; Thomas Britton
>>>> <tbritton at jlab.org>
>>>> *Cc: *HallD Software Group <HallD-Offline at jlab.org>
>>>> *Subject: *Re: [EXTERNAL] auxilliary data file needed for running with
>>>> HADR=4
>>>>
>>>>
>>>>
>>>> Hi all,
>>>>
>>>>
>>>>
>>>> As a follow up to this and to keep a record for others, I can not get
>>>> the HADR 4 option to work when submitting jobs to the ifarm via MCWrapper
>>>> batch=2. I get a reasonable output when I run the job interactively, as
>>>> seen above. I'm using the same environment, but I'm guessing somehow the
>>>> correct file is not being found in batch mode. I do not see anything that
>>>> stands out in the log files. Thomas, any suggestions or ideas on why
>>>> MCWrapper does not recognize this file? My CERNLIB is located at
>>>> /group/halld/Software/builds/Linux_CentOS7.7-x86_64-gcc4.8.5/cernlib/2005/lib.
>>>>
>>>>
>>>>
>>>> -Colin
>>>>
>>>>
>>>>
>>>> On Wed, May 13, 2020 at 9:48 AM Colin Gleason <gleasonc at jlab.org>
>>>> wrote:
>>>>
>>>> Thanks for the information, Richard. Sure enough, I do not have
>>>> $CERNLIB defined using the standard build. As a workaround to what Sean
>>>> suggested, and since I am usig C shell, I added
>>>>
>>>>
>>>>
>>>> setenv CERNLIB
>>>> /group/halld/Software/builds/Linux_CentOS7.7-x86_64-gcc4.8.5/cernlib/2005/lib
>>>>
>>>>
>>>>
>>>> to my setup_gluex.csh file that gets sourced when calling my
>>>> environment. When I tested with 1k generated events, I got 89
>>>> reconstructed. Before that, as in without flukaaf.dat, I was getting 8.
>>>> This compares to the ~7% reconstructed events using HADR=1. I will rerun my
>>>> simulation using this setup.
>>>>
>>>>
>>>>
>>>> -Ccolin
>>>>
>>>>
>>>>
>>>> On Wed, May 13, 2020 at 8:53 AM Richard Jones <
>>>> richard.t.jones at uconn.edu> wrote:
>>>>
>>>> Colin and all,
>>>>
>>>>
>>>>
>>>> An input data file flukaaf.dat is a needed input file for running
>>>> hdgeant with HADR=4. This file usually resides in $CERNLIB. If CERNLIB is
>>>> defined on your system, then things should work. If not, then you should be
>>>> sure to place a copy of flukaaf.dat in the directory from which you run
>>>> hdgeant. A copy of this is found in the halld-sim repo in the halld
>>>> software area, or on cvmfs, or on github at the link provided below. Take
>>>> your pick, they should all be the same.
>>>>
>>>>
>>>>
>>>> - /cvmfs/
>>>> oasis.opensciencegrid.org/gluex/group/halld/Software/builds/Linux_CentOS7-x86_64-gcc4.8.5-cntr/cernlib/2005/lib/flukaaf.dat
>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__nam10.safelinks.protection.outlook.com_-3Furl-3Dhttps-253A-252F-252Furldefense.proofpoint.com-252Fv2-252Furl-253Fu-253Dhttp-2D3A-5F-5Foasis.opensciencegrid.org-5Fgluex-5Fgroup-5Fhalld-5FSoftware-5Fbuilds-5FLinux-2D5FCentOS7-2D2Dx86-2D5F64-2D2Dgcc4.8.5-2D2Dcntr-5Fcernlib-5F2005-5Flib-5Fflukaaf.dat-2526d-253DDwMFaQ-2526c-253DCJqEzB1piLOyyvZjb8YUQw-2526r-253D-5Fp-5FZf1fP8D9GtGtaEgIPjViLbHJLGv-5FRV32KAKGtMbE-2526m-253D2yyxB2SUMQDNM7BpmwdbEPaT6IB-2D5Cn9bHhxQqrrQKg-2526s-253D63gpT7ZWLQ0R-2DWa6hSh-2DzaVffpwWqaywCNXMmII8XB8-2526e-253D-26data-3D02-257C01-257Crichard.t.jones-2540uconn.edu-257Cdf38f324a47d4c1f2feb08d7f8f70eff-257C17f1a87e2a254eaab9df9d439034b080-257C0-257C0-257C637251612309155975-26sdata-3DymFaf91wg76i5zfjuF4IG3UFf8TFvRcJG-252F2Z3I5TUHo-253D-26reserved-3D0&d=DwMFaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=_p_Zf1fP8D9GtGtaEgIPjViLbHJLGv_RV32KAKGtMbE&m=Jt5DGYkn6UBnm7aaKn4QomtiJpeYlkhgLkhrYEJRDDY&s=Iw81ro7omlGojsvsoW4h2aXqzP4QN2bGn_aOGkp-KPo&e=>
>>>> -
>>>> /u/group/halld/Software/builds/Linux_CentOS7-x86_64-gcc4.8.5/halld_sim/halld_sim-4.13.0/src/programs/Simulation/HDGeant/flukaaf.dat
>>>> -
>>>> https://github.com/JeffersonLab/halld_sim/blob/master/src/programs/Simulation/HDGeant/flukaaf.dat
>>>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__nam10.safelinks.protection.outlook.com_-3Furl-3Dhttps-253A-252F-252Furldefense.proofpoint.com-252Fv2-252Furl-253Fu-253Dhttps-2D3A-5F-5Fgithub.com-5FJeffersonLab-5Fhalld-2D5Fsim-5Fblob-5Fmaster-5Fsrc-5Fprograms-5FSimulation-5FHDGeant-5Fflukaaf.dat-2526d-253DDwMFaQ-2526c-253DCJqEzB1piLOyyvZjb8YUQw-2526r-253D-5Fp-5FZf1fP8D9GtGtaEgIPjViLbHJLGv-5FRV32KAKGtMbE-2526m-253D2yyxB2SUMQDNM7BpmwdbEPaT6IB-2D5Cn9bHhxQqrrQKg-2526s-253DS73Xf0DOqe72vg3PyfcLRlVQxN1qwLRuyhuySiXPaDU-2526e-253D-26data-3D02-257C01-257Crichard.t.jones-2540uconn.edu-257Cdf38f324a47d4c1f2feb08d7f8f70eff-257C17f1a87e2a254eaab9df9d439034b080-257C0-257C0-257C637251612309165971-26sdata-3DMPZkxeQDOT7m8wO0TNFRWPiO4eKPv3y13uYs0hS06c8-253D-26reserved-3D0&d=DwMFaQ&c=CJqEzB1piLOyyvZjb8YUQw&r=_p_Zf1fP8D9GtGtaEgIPjViLbHJLGv_RV32KAKGtMbE&m=Jt5DGYkn6UBnm7aaKn4QomtiJpeYlkhgLkhrYEJRDDY&s=TPp-8YcvNmgwSJNfPMaOhdklQDLDCVqmfTX6JFQHnRM&e=>
>>>>
>>>> -Richard Jones
>>>>
>>>>
>>>>
>>>>
>>>> --
>>>>
>>>> Colin Gleason
>>>>
>>>> Postdoctoral Fellow
>>>> Indiana University
>>>> Department of Physics
>>>>
>>>>
>>>>
>>>>
>>>> --
>>>>
>>>> Colin Gleason
>>>>
>>>> Postdoctoral Fellow
>>>> Indiana University
>>>> Department of Physics
>>>>
>>>>
>>>>
>>>
>>>
>>> --
>>> Colin Gleason
>>> Postdoctoral Fellow
>>> Indiana University
>>> Department of Physics
>>>
>>>
>>
>> --
>> Colin Gleason
>> Postdoctoral Fellow
>> Indiana University
>> Department of Physics
>>
>
--
Colin Gleason
Postdoctoral Fellow
Indiana University
Department of Physics
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