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    <blockquote type="cite">….ARE the occupancies x2 higher???</blockquote>
    This was just a naive assumption, also I assumed the computing time
    doesn't linearly depend on occupancies,<br>
    I was more wondered, that I can not reproduce the code speed that we
    had 6 months ago.<br>
    <br>
    Rafo<br>
    <br>
    <br>
    <div class="moz-cite-prefix">On 05/22/2017 03:19 PM, Graham, Mathew
      Thomas wrote:<br>
    </div>
    <blockquote type="cite"
      cite="mid:B8AD0503-2080-417D-AB1A-2377324019B8@slac.stanford.edu">
      <div>
        <blockquote type="cite" class=""><br
            class="Apple-interchange-newline">
          <div class="">
            <div text="#000000" bgcolor="#FFFFFF" class="">2.3 GeV data
              recon speed is x2 slower than the 1.05 data recon speed.<br
                class="">
              This is concerning, but maybe there is a good reason for
              that, i.e. might be hit occupancies are high etc,<br
                class="">
            </div>
          </div>
        </blockquote>
        <div><br class="">
        </div>
        <div><br class="">
        </div>
        <div>….ARE the occupancies x2 higher???</div>
        <br class="">
        <blockquote type="cite" class="">
          <div class="">
            <div text="#000000" bgcolor="#FFFFFF" class=""><br class="">
              but the other thing, that seems puzzling, is recon speed
              for 2.3 GeV data is now more than x2 slower<br class="">
              using the same hps-java version, same detector, same java
              version, as we did for pass0.<br class="">
            </div>
          </div>
        </blockquote>
        <div><br class="">
        </div>
        <div><br class="">
        </div>
        <div>Ok, that’s legit weird.  </div>
        <div><br class="">
        </div>
        <br class="">
        <blockquote type="cite" class="">
          <div class="">
            <div text="#000000" bgcolor="#FFFFFF" class=""><br class="">
              Rafo<br class="">
              <br class="">
              <br class="">
              <div class="moz-cite-prefix">On 05/22/2017 03:10 PM,
                Graham, Mathew Thomas wrote:<br class="">
              </div>
              <blockquote type="cite"
                cite="mid:4AB85148-FF7F-436B-9F1D-ABC163ACD234@slac.stanford.edu"
                class="">
                <div class=""><br class="">
                </div>
                <div class="">Sorry to ask a dumb question…but I will
                  anyway.  </div>
                <div class=""><br class="">
                </div>
                <div class="">This is a “2.3 GeV vs 1.05 GeV” issue?  Or
                  an hps-java version issue? </div>
                <br class="">
                <div class="">
                  <blockquote type="cite" class="">
                    <div class="">On May 22, 2017, at 12:05 PM, Omar
                      Moreno <<a href="mailto:email@omarmoreno.net"
                        class="" moz-do-not-send="true">email@omarmoreno.net</a>>
                      wrote:</div>
                    <br class="Apple-interchange-newline">
                    <div class="">
                      <div dir="auto" class="">Jeremy has also profiled
                        the recon before so if Maurik can't do it, I'm
                        sure he can. </div>
                      <div class="gmail_extra"><br class="">
                        <div class="gmail_quote">On May 22, 2017 11:46
                          AM, "Rafayel Paremuzyan" <<a
                            href="mailto:rafopar@jlab.org" class=""
                            moz-do-not-send="true">rafopar@jlab.org</a>>
                          wrote:<br type="attribution" class="">
                          <blockquote class="quote" style="margin:0 0 0
                            .8ex;border-left:1px #ccc
                            solid;padding-left:1ex">
                            Hi Alessandra and all,<br class="">
                            <br class="">
                            Yes clearly I see that pattern as well,<br
                              class="">
                            going to the faster machine (pumpkin1), as
                            Maurik suggested,<br class="">
                            recon speed increased, but 2016 recon was
                            about x2 slower than the 2015 recon speed.<br
                              class="">
                            I also tried to with -Xms=4000m -Xmx=4000m
                            options, and without that options,<br
                              class="">
                            but I didn't notice noticeable speed
                            improvement.<br class="">
                            <br class="">
                            Another thing that is *concering* is I run<br
                              class="">
                            same jar on batch farms, centos6. and
                            centos7, and<br class="">
                            can't get same speed as we got during the
                            pass0.<br class="">
                            Note, jar is the same,  detector is the
                            same, run number and file number is the
                            same.<br class="">
                            Difference is the time when it started to
                            tun (Oct 19 2016 vs May 21 2017)<br class="">
                            <br class="">
                            If someone is interested to look at job log
                            files<br class="">
                            The log file that I run yesterday:
                            /lustre/expphy/work/hallb/hps/<wbr class="">data/physrun2016/tpass1/logs/h<wbr
                              class="">ps_008054.27_pass0XML.err<br
                              class="">
                            The log file that run on Oct 19 2016 for
                            pass0 /lustre/expphy/work/hallb/hps/<wbr
                              class="">data/physrun2016/pass0/logs/hp<wbr
                              class="">s_008054.27_R3.9.err<br class="">
                            <br class="">
                            I have never done profiling with java.<br
                              class="">
                            I know Maurik is in workshop, he might not
                            have time to do this,<br class="">
                            if someone else is set up doing this, it
                            will probably be useful.<br class="">
                            <br class="">
                            Also, I noticed /group/hps is full<br
                              class="">
                            <br class="">
                            Has anyone recently put some data there?<br
                              class="">
                            <br class="">
                            Rafo
                            <div class="elided-text"><br class="">
                              <br class="">
                              <br class="">
                              On 05/22/2017 04:04 AM, Alessandra Filippi
                              wrote:<br class="">
                            </div>
                            <blockquote class="gmail_quote"
                              style="margin:0 0 0 .8ex;border-left:1px
                              #ccc solid;padding-left:1ex">
                              <div class="elided-text">Hi Maurik, Rafo
                                and all,<br class="">
                                I think that the different Java VM could
                                impact on the absolute speed comparing
                                different machines and jar versions
                                compiled in different times... but I am
                                running the same jar (hps-java 3.10,
                                compiled afresh at slac on rhel6-64, jvm
                                1.7.0) on 2015 and 2016 data, and the
                                factor ~2 of speed decrease for newer
                                data is striking (whichever geometry
                                version).<br class="">
                                About garbage collection, I don't use
                                any flag in compilation, so it acts in
                                default mode in both cases.<br class="">
                                <br class="">
                                Are 2016 data affected by more noisy
                                hits that could extend the
                                reconstruction time over testing all
                                different strategies, to your knowledge?<br
                                  class="">
                                cheers<br class="">
                                    Alessandra<br class="">
                                <br class="">
                                <br class="">
                                <br class="">
                                <br class="">
                                <br class="">
                                <br class="">
                                On Sun, 21 May 2017, Maurik Holtrop
                                wrote:<br class="">
                                <br class="">
                              </div>
                              <blockquote class="gmail_quote"
                                style="margin:0 0 0 .8ex;border-left:1px
                                #ccc solid;padding-left:1ex">
                                <div class="elided-text">Hello Rafo,<br
                                    class="">
                                  One thing that probably is different
                                  between the last time we ran with the
                                  3.8 jar and now<br class="">
                                  is a different version of the Java VM.
                                  It could well be that the newer
                                  version of Java is<br class="">
                                  not faster. Also, it is tricky to
                                  compare Endeavour with the Jlab farm
                                  computers. They are<br class="">
                                  probably not equivalent in speed. At
                                  UNH, Pumpkin has the more modern
                                  processors, whereas<br class="">
                                  Endeavour is now ~5 years old.<br
                                    class="">
                                  <br class="">
                                  Best,<br class="">
                                  Maurik<br class="">
                                  <br class="">
                                        On May 21, 2017, at 6:54 AM,
                                  Rafayel Paremuzyan <<a
                                    href="mailto:rafopar@jlab.org"
                                    target="_blank" class=""
                                    moz-do-not-send="true">rafopar@jlab.org</a>>
                                  wrote:<br class="">
                                  <br class="">
                                  Hi Alessandra, Norman, all<br class="">
                                  <br class="">
                                  thank you for replay and your tests.<br
                                    class="">
                                  <br class="">
                                  I tested both 2015 and 2016 data using
                                  v4-4 detector on UNH computers.<br
                                    class="">
                                  I have use 3.8 JAR (the jar for 2015
                                  pass6). 3.9 JAR (the jar for 2016
                                  pass0 recon),<br class="">
                                  and the NEW jar v051717 (the newest
                                  jar tag is v051717)<br class="">
                                  <br class="">
                                  Ok, I also noticed that recon of 2015
                                  data is faster that 2016 data.<br
                                    class="">
                                  Also seems the new jar is 20% slower
                                  than the 3.9 jar for 2016 data, and
                                  about 60%<br class="">
                                  slower for 2015 data.<br class="">
                                  now recon speed is about 2.55 EV/S for
                                  2015 data, This is too slow<br
                                    class="">
                                  it cause more than 40h for a single
                                  file.<br class="">
                                  <br class="">
                                  Ths is summary of code speeds with
                                  different jar files<br class="">
                                  V4-4 Detector, UNH (endeavour), 5K
                                  events are reconstructed<br class="">
                                  <br class="">
                                  Events per second<br class="">
                                  Events per second<br class="">
                                  Events per second<br class="">
                                  <br class="">
                                  3.8JAR (2015 recon jar)<br class="">
                                  3.9JAR, 2016 pass0 recon jar<br
                                    class="">
                                  v051717JAR, jar vor tpass1<br class="">
                                  2015 Data 5772, file 20<br class="">
                                  5.07<br class="">
                                  5.19<br class="">
                                  3.157<br class="">
                                  2016 Data file 25<br class="">
                                  <br class="">
                                  3.11<br class="">
                                  2.53<br class="">
                                  <br class="">
                                  *However* I looked into job Wall times
                                  for pass0 recon.<br class="">
                                  The recon speed is more than 7.4
                                  Events/sec, which is about x3 faster
                                  than with the<br class="">
                                  new JAR.<br class="">
                                  <br class="">
                                  I again checked *same 3.9 jar*, which
                                  is slower again.<br class="">
                                  I don't know why now the code speed is
                                  so low!<br class="">
                                  <br class="">
                                  <br class="">
                                  Norman, I have tried the
                                  "-DdisableSvtAlignmentConstant<wbr
                                    class="">s", but it didn't work<br
                                    class="">
                                  <br class="">
                                  =================The
                                  command===============<br class="">
                                  java -XX:+UseSerialGC -cp
                                  hps-distribution-3.11-v051717-<wbr
                                    class="">bin.jar<br class="">
                                  org.hps.evio.EvioToLcio -x
                                  /org/hps/steering/recon/Physic<wbr
                                    class="">sRun2016FullRecon.lcsim -r<br
                                    class="">
                                  -d HPS-PhysicsRun2016-v5-3-fieldm<wbr
                                    class="">ap_globalAlign -R 7796
                                  -DoutputFile=out_7796_0<br class="">
                                  -DdisableSvtAlignmentConstants
                                  hps_007796.evio.25 -n 10000<br
                                    class="">
                                  <br class="">
                                  ============The error
                                  backtrache============<br class="">
                                  2017-05-21 00:45:39 [CONFIG]
                                  org.hps.evio.EvioToLcio parse :: using
                                  steering<br class="">
                                  resource
                                  /org/hps/steering/recon/Physic<wbr
                                    class="">sRun2016FullRecon.lcsim<br
                                    class="">
                                  2017-05-21 00:45:39 [CONFIG]
                                  org.hps.evio.EvioToLcio parse :: set
                                  max events to<br class="">
                                  10000<br class="">
                                  2017-05-21 00:45:48 [INFO]
                                  org.hps.rundb.RunManager <init>
                                  :: ConnectionParameters {<br class="">
                                  database: hps_run_db_v2, hostname: <a
                                    href="http://hpsdb.jlab.org/"
                                    rel="noreferrer" target="_blank"
                                    class="" moz-do-not-send="true">
                                    hpsdb.jlab.org</a>, password:
                                  darkphoton, port: 3306,<br class="">
                                  user: hpsuser }<br class="">
                                  2017-05-21 00:45:48 [CONFIG]
                                  org.lcsim.job.JobControlManage<wbr
                                    class="">r addVariableDefinition<br
                                    class="">
                                  :: outputFile = out_7796_0<br class="">
                                  2017-05-21 00:45:48 [CONFIG]
                                  org.hps.evio.EvioToLcio parse :: set
                                  steering variable:<br class="">
                                  outputFile=out_7796_0<br class="">
                                  2017-05-21 00:45:48 [SEVERE]
                                  org.hps.evio.EvioToLcio parse :: bad
                                  variable format:<br class="">
                                  disableSvtAlignmentConstants<br
                                    class="">
                                  java.lang.IllegalArgumentExcep<wbr
                                    class="">tion: Bad variable format:<br
                                    class="">
                                  disableSvtAlignmentConstants<br
                                    class="">
                                          at
                                  org.hps.evio.EvioToLcio.parse(<wbr
                                    class="">EvioToLcio.java:393)<br
                                    class="">
                                          at
                                  org.hps.evio.EvioToLcio.main(E<wbr
                                    class="">vioToLcio.java:97)<br
                                    class="">
                                  <br class="">
                                  Exception in thread "main"
                                  java.lang.IllegalArgumentExcep<wbr
                                    class="">tion: Bad variable format:<br
                                    class="">
                                  disableSvtAlignmentConstants<br
                                    class="">
                                          at
                                  org.hps.evio.EvioToLcio.parse(<wbr
                                    class="">EvioToLcio.java:393)<br
                                    class="">
                                          at
                                  org.hps.evio.EvioToLcio.main(E<wbr
                                    class="">vioToLcio.java:97)<br
                                    class="">
                                  <br class="">
                                  Rafo<br class="">
                                  <br class="">
                                  <br class="">
                                  <br class="">
                                  <br class="">
                                  <br class="">
                                  <br class="">
                                  On 05/20/2017 06:17 AM, Alessandra
                                  Filippi wrote:<br class="">
                                        Hi Rafo, all,<br class="">
                                        I also noticed that the
                                  reconstruction for 2016 data is about
                                  twice as<br class="">
                                        slow as compared to 2015
                                  (whichever geometry and reconstruction<br
                                    class="">
                                        version).<br class="">
                                        This happens when I run the
                                  aligned geometry as well as the
                                  "current"<br class="">
                                        one (v5.0), and the geometry
                                  taken from the db as well (the result
                                  is<br class="">
                                        the same as v5.0). I did not
                                  make any test with v4.4, though -
                                  actually<br class="">
                                        as far as svt alignment is
                                  concerned it should be the same as
                                  v5.0. Can<br class="">
                                        you please try and make the same
                                  short test with the newest jar with<br
                                    class="">
                                        v4.4?<br class="">
                                        This happens to me both with
                                  hps-java 5.10 and 5.11 (not the most<br
                                    class="">
                                        updated one).<br class="">
                                  <br class="">
                                        I would be surprised if it could
                                  be something connected to the<br
                                    class="">
                                        alignment, unless for some
                                  reason new positions and harder tracks<br
                                    class="">
                                        trigger some long loops in the
                                  reconstruction. But this happens (to
                                  me)<br class="">
                                        also with the<br class="">
                                        standard geometry, so a check
                                  with the one used with pass0 (that
                                  should<br class="">
                                        however be equivalent to v5.0)
                                  could at least help to rule out, or
                                  blame<br class="">
                                        on, the alignment step.<br
                                    class="">
                                        Thanks, cheers<br class="">
                                            Alessandra<br class="">
                                  <br class="">
                                  <br class="">
                                        ps. make also sure that the
                                  correct fieldmap is called in all the<br
                                    class="">
                                        compact files - you never know!<br
                                    class="">
                                  <br class="">
                                  <br class="">
                                  <br class="">
                                        On Fri, 19 May 2017, Rafayel
                                  Paremuzyan wrote:<br class="">
                                  <br class="">
                                              Hi All,<br class="">
                                  <br class="">
                                              During the testing the
                                  recon for test pass1,<br class="">
                                              I noticed the recon time
                                  is more than x2 longer wrt pass0<br
                                    class="">
                                              recon time.<br class="">
                                  <br class="">
                                              To demonstrate it<br
                                    class="">
                                              I submit 3 simple jobs
                                  with 10K events to reconstruct, with<br
                                    class="">
                                              new pass1 xml<br class="">
                                              file (this has the new jar
                                  v051717, and the new detector<br
                                    class="">
                                             
                                  HPS-PhysicsRun2016-v5-3-fieldm<wbr
                                    class="">ap_globalAlign),<br
                                    class="">
                                              and the old pass0 xml file
                                  (pass0 jar release 3.9, and the<br
                                    class="">
                                              detector<br class="">
                                             
                                  HPS-PhysicsRun2016-Nominal-v4-<wbr
                                    class="">4-fieldmap)<br class="">
                                  <br class="">
                                              Below is a printout from
                                  the jobs with a new JAR, v051717,<br
                                    class="">
                                              the average time<br
                                    class="">
                                              for 1000 events is more
                                  than 7 minutes<br class="">
                                              ===================== LOG
                                  from the v051717 JAR<br class="">
                                             
                                  ==============================<br
                                    class="">
                                              2017-05-19 09:36:51 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10614074 with sequence 0<br
                                    class="">
                                              2017-05-19 09:43:13 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10615074 with sequence
                                  1000<br class="">
                                              2017-05-19 09:49:18 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10616074 with sequence
                                  2000<br class="">
                                              2017-05-19 09:55:54 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10617074 with sequence
                                  3000<br class="">
                                              2017-05-19 10:02:55 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10618074 with sequence
                                  4000<br class="">
                                              2017-05-19 10:09:57 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10619074 with sequence
                                  5000<br class="">
                                              2017-05-19 10:16:13 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10620074 with sequence
                                  6000<br class="">
                                              2017-05-19 10:25:20 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10621074 with sequence
                                  7000<br class="">
                                              2017-05-19 10:32:56 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10622074 with sequence
                                  8000<br class="">
                                              2017-05-19 10:36:19
                                  [WARNING]<br class="">
                                             
                                  org.hps.recon.tracking.Tracker<wbr
                                    class="">ReconDriver<br class="">
                                              process :: Discarding
                                  track with bad HelicalTrackHit<br
                                    class="">
                                              (correction distance<br
                                    class="">
                                              0.000000, chisq penalty
                                  0.000000)<br class="">
                                              2017-05-19 10:42:03 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10623074 with sequence
                                  9000<br class="">
                                              2017-05-19 10:47:44 [INFO]
                                  org.hps.evio.EvioToLcio run ::<br
                                    class="">
                                              maxEvents 10000<br
                                    class="">
                                              was reached<br class="">
                                              2017-05-19 10:47:44 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              endOfData ::<br class="">
                                              10000 events processed in
                                  job.<br class="">
                                              2017-05-19 10:47:44 [INFO]
                                  org.hps.evio.EvioToLcio run ::<br
                                    class="">
                                              Job finished<br class="">
                                              successfully!<br class="">
                                  <br class="">
                                  <br class="">
                                              And below is the Job log
                                  info from the pass0 jar. The<br
                                    class="">
                                              average time for 1000<br
                                    class="">
                                              events is less than 3
                                  minutes<br class="">
                                              ===================== LOG
                                  from the 3.9 release JAR<br class="">
                                             
                                  ==============================<br
                                    class="">
                                              2017-05-19 13:19:46 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10614074 with sequence 0<br
                                    class="">
                                              2017-05-19 13:23:36 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10615074 with sequence
                                  1000<br class="">
                                              2017-05-19 13:27:03 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10616074 with sequence
                                  2000<br class="">
                                              2017-05-19 13:30:40 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10617074 with sequence
                                  3000<br class="">
                                              2017-05-19 13:34:20 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10618074 with sequence
                                  4000<br class="">
                                              2017-05-19 13:38:11 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10619074 with sequence
                                  5000<br class="">
                                              2017-05-19 13:41:43 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10620074 with sequence
                                  6000<br class="">
                                              2017-05-19 13:45:54
                                  [WARNING]<br class="">
                                             
                                  org.hps.recon.tracking.Tracker<wbr
                                    class="">ReconDriver<br class="">
                                              process :: Discarding
                                  track with bad HelicalTrackHit<br
                                    class="">
                                              (correction distance<br
                                    class="">
                                              0.000000, chisq penalty
                                  0.000000)<br class="">
                                              2017-05-19 13:46:05 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10621074 with sequence
                                  7000<br class="">
                                              2017-05-19 13:50:08 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10622074 with sequence
                                  8000<br class="">
                                              2017-05-19 13:55:03 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              process :: Event<br
                                    class="">
                                              10623074 with sequence
                                  9000<br class="">
                                              2017-05-19 13:58:27 [INFO]
                                  org.hps.evio.EvioToLcio run ::<br
                                    class="">
                                              maxEvents 10000<br
                                    class="">
                                              was reached<br class="">
                                              2017-05-19 13:58:27 [INFO]
                                  org.lcsim.job.EventMarkerDrive<wbr
                                    class="">r<br class="">
                                              endOfData ::<br class="">
                                              10000 events processed in
                                  job.<br class="">
                                              2017-05-19 13:58:27 [INFO]
                                  org.hps.evio.EvioToLcio run ::<br
                                    class="">
                                              Job finished<br class="">
                                              successfully!<br class="">
                                  <br class="">
                                              I also tried to do
                                  reconstruction by myself
                                  interactively,<br class="">
                                              but I am getting<br
                                    class="">
                                              error below,<br class="">
                                  <br class="">
                                              The command<br class="">
                                             
                                  /apps/scicomp/java/jdk1.7/bin/<wbr
                                    class="">java -XX:+UseSerialGC -cp<br
                                    class="">
                                             
                                  hps-distribution-3.9-bin.jar
                                  org.hps.evio.EvioToLcio -x<br class="">
                                  /org/hps/steering/recon/Physic<wbr
                                    class="">sRun2016FullRecon.lcsim -r
                                  -d<br class="">
                                             
                                  HPS-PhysicsRun2016-v5-3-fieldm<wbr
                                    class="">ap_globalAlign -R 7796<br
                                    class="">
                                              -DoutputFile=out_7796_0<br
                                    class="">
                                              hps_007796.evio.0 -n 10000<br
                                    class="">
                                  <br class="">
                                              The Error traceback<br
                                    class="">
                                              017-05-19 14:58:44
                                  [CONFIG] org.hps.evio.EvioToLcio parse
                                  ::<br class="">
                                              using steering<br class="">
                                              resource<br class="">
                                  /org/hps/steering/recon/Physic<wbr
                                    class="">sRun2016FullRecon.lcsim<br
                                    class="">
                                              2017-05-19 14:58:44
                                  [CONFIG] org.hps.evio.EvioToLcio parse<br
                                    class="">
                                              :: set max events<br
                                    class="">
                                              to 10000<br class="">
                                              2017-05-19 14:58:45
                                  [CONFIG]<br class="">
                                             
                                  org.lcsim.job.JobControlManage<wbr
                                    class="">r<br class="">
                                              addVariableDefinition ::
                                  outputFile = out_7796_0<br class="">
                                              2017-05-19 14:58:45
                                  [CONFIG] org.hps.evio.EvioToLcio parse<br
                                    class="">
                                              :: set steering<br
                                    class="">
                                              variable:
                                  outputFile=out_7796_0<br class="">
                                              2017-05-19 14:58:45
                                  [CONFIG]
                                  org.lcsim.job.JobControlManage<wbr
                                    class="">r<br class="">
                                              initializeLoop<br class="">
                                              :: initializing LCSim loop<br
                                    class="">
                                              2017-05-19 14:58:45
                                  [CONFIG]
                                  org.lcsim.job.JobControlManage<wbr
                                    class="">r<br class="">
                                              initializeLoop<br class="">
                                              :: Event marker printing
                                  disabled.<br class="">
                                              2017-05-19 14:58:45 [INFO]<br
                                    class="">
                                  org.hps.conditions.database.Da<wbr
                                    class="">tabaseConditionsManager<br
                                    class="">
                                              resetInstance ::<br
                                    class="">
                                              DatabaseConditionsManager
                                  instance is reset<br class="">
                                              Exception in thread "main"
                                  java.lang.UnsatisfiedLinkError<wbr
                                    class="">:<br class="">
                                  /u/apps/scicomp/java/jdk1.7.0_<wbr
                                    class="">75/jre/lib/i386/xawt/libmawt.s<wbr
                                    class="">o:<br class="">
                                              libXext.so.6:<br class="">
                                              cannot open shared object
                                  file: No such file or directory<br
                                    class="">
                                                      at
                                  java.lang.ClassLoader$NativeLi<wbr
                                    class="">brary.load(Native<br
                                    class="">
                                              Method)<br class="">
                                                      at<br class="">
                                  java.lang.ClassLoader.loadLibr<wbr
                                    class="">ary1(ClassLoader.java:1965)<br
                                    class="">
                                                      at<br class="">
                                  java.lang.ClassLoader.loadLibr<wbr
                                    class="">ary0(ClassLoader.java:1890)<br
                                    class="">
                                                      at<br class="">
                                  java.lang.ClassLoader.loadLibr<wbr
                                    class="">ary(ClassLoader.java:1851)<br
                                    class="">
                                                      at
                                  java.lang.Runtime.load0(Runtim<wbr
                                    class="">e.java:795)<br class="">
                                                      at
                                  java.lang.System.load(System.j<wbr
                                    class="">ava:1062)<br class="">
                                                      at
                                  java.lang.ClassLoader$NativeLi<wbr
                                    class="">brary.load(Native<br
                                    class="">
                                              Method)<br class="">
                                                      at<br class="">
                                  java.lang.ClassLoader.loadLibr<wbr
                                    class="">ary1(ClassLoader.java:1965)<br
                                    class="">
                                                      at<br class="">
                                  java.lang.ClassLoader.loadLibr<wbr
                                    class="">ary0(ClassLoader.java:1890)<br
                                    class="">
                                                      at<br class="">
                                  java.lang.ClassLoader.loadLibr<wbr
                                    class="">ary(ClassLoader.java:1872)<br
                                    class="">
                                                      at
                                  java.lang.Runtime.loadLibrary0<wbr
                                    class="">(Runtime.java:849)<br
                                    class="">
                                                      at
                                  java.lang.System.loadLibrary(S<wbr
                                    class="">ystem.java:1088)<br
                                    class="">
                                                      at<br class="">
                                  sun.security.action.LoadLibrar<wbr
                                    class="">yAction.run(LoadLibraryAction.<wbr
                                    class="">java:67)<br class="">
                                                      at<br class="">
                                  sun.security.action.LoadLibrar<wbr
                                    class="">yAction.run(LoadLibraryAction.<wbr
                                    class="">java:47)<br class="">
                                                      at<br class="">
                                             
                                  java.security.AccessController<wbr
                                    class="">.doPrivileged(Native
                                  Method)<br class="">
                                                      at<br class="">
                                             
                                  java.awt.Toolkit.loadLibraries<wbr
                                    class="">(Toolkit.java:1653)<br
                                    class="">
                                                      at
                                  java.awt.Toolkit.<clinit>(Tool<wbr
                                    class="">kit.java:1682)<br class="">
                                                      at
                                  java.awt.Component.<clinit>(Co<wbr
                                    class="">mponent.java:595)<br
                                    class="">
                                                      at
                                  org.lcsim.util.aida.AIDA.<init<wbr
                                    class="">>(AIDA.java:68)<br
                                    class="">
                                                      at<br class="">
                                  org.lcsim.util.aida.AIDA.defau<wbr
                                    class="">ltInstance(AIDA.java:53)<br
                                    class="">
                                                      at<br class="">
                                  org.hps.evio.RfFitterDriver.<i<wbr
                                    class="">nit>(RfFitterDriver.java:31)<br
                                    class="">
                                                      at<br class="">
                                  sun.reflect.NativeConstructorA<wbr
                                    class="">ccessorImpl.newInstance0(<wbr
                                    class="">Native<br class="">
                                              Method)<br class="">
                                          atsun.reflect.NativeConstructo<wbr
                                    class="">rAccessorImpl.newInstance(Nati<wbr
                                    class="">veConstructorAcce<br
                                    class="">
                                              ssorImpl.java:57)<br
                                    class="">
                                          atsun.reflect.DelegatingConstr<wbr
                                    class="">uctorAccessorImpl.newInstance(<wbr
                                    class="">DelegatingConstru<br
                                    class="">
                                              ctorAccessorImpl.java:45)<br
                                    class="">
                                                      at<br class="">
                                  java.lang.reflect.Constructor.<wbr
                                    class="">newInstance(Constructor.java:5<wbr
                                    class="">26)<br class="">
                                                      at
                                  java.lang.Class.newInstance(Cl<wbr
                                    class="">ass.java:379)<br class="">
                                                      at<br class="">
                                  org.lcsim.job.JobControlManage<wbr
                                    class="">r.setupDrivers(JobControlManag<wbr
                                    class="">er.java:1199)
                                  <br class="">
                                                      at<br class="">
                                  org.hps.job.JobManager.setupDr<wbr
                                    class="">ivers(JobManager.java:82)<br
                                    class="">
                                                      at<br class="">
                                  org.lcsim.job.JobControlManage<wbr
                                    class="">r.setup(JobControlManager.<wbr
                                    class="">java:1052)<br class="">
                                                      at<br class="">
                                  org.lcsim.job.JobControlManage<wbr
                                    class="">r.setup(JobControlManager.<wbr
                                    class="">java:1110)<br class="">
                                                      at<br class="">
                                             
                                  org.hps.evio.EvioToLcio.parse(<wbr
                                    class="">EvioToLcio.java:407)<br
                                    class="">
                                                      at
                                  org.hps.evio.EvioToLcio.main(E<wbr
                                    class="">vioToLcio.java:97)<br
                                    class="">
                                  <br class="">
                                  <br class="">
                                  <br class="">
                                              I see this library
                                  libXext.so.6: in /usr/lib64, but not
                                  in<br class="">
                                              /usr/lib,<br class="">
                                              when I put /usr/lib64 in
                                  my LD_LIBRARY_PATH, then it<br
                                    class="">
                                              complaines again (see<br
                                    class="">
                                              below)<br class="">
                                  <br class="">
                                              Exception in thread "main"
                                  java.lang.UnsatisfiedLinkError<wbr
                                    class="">:<br class="">
                                  /u/apps/scicomp/java/jdk1.7.0_<wbr
                                    class="">75/jre/lib/i386/xawt/libmawt.s<wbr
                                    class="">o:<br class="">
                                              libXext.so.6:<br class="">
                                              wrong ELF class:
                                  ELFCLASS64<br class="">
                                  <br class="">
                                              I would appreciate, if I
                                  get some help on running the<br
                                    class="">
                                              reconstruction<br class="">
                                              interactively, then I
                                  could look more closely into logs<br
                                    class="">
                                              of the old, and new JAR
                                  files.<br class="">
                                  <br class="">
                                              Rafo<br class="">
                                  <br class="">
                                  <br class="">
                                  ______________________________<wbr
                                    class="">______________________________<wbr
                                    class="">________________
                                  <br class="">
                                  <br class="">
                                              Use REPLY-ALL to reply to
                                  list<br class="">
                                  <br class="">
                                              To unsubscribe from the
                                  HPS-SOFTWARE list, click the<br
                                    class="">
                                              following link:<br
                                    class="">
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href="https://urldefense.proofpoint.com/v2/url?u=https-3A__listserv.slac.stanford.edu_cgi-2Dbin"
                                    rel="noreferrer" target="_blank"
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                                  <br class="">
                                  _wa-3FSUBED1-3DHPS-2DSOFTWARE-<wbr
                                    class="">26A-3D1&d=DwIDaQ&c=lz9TcOasaIN<wbr
                                    class="">aaC3U7FbMev2lsutwpI4--09aP8Lu
                                  <br class="">
                                  18s&r=0HDJrGO9TZQTE97J9Abt2A&m<wbr
                                    class="">=xnbGP5VHYWRAQRWRksVgMnYvBkXWI<wbr
                                    class="">4roLxztdJ0Tp9I&s=ppNYedSrn5DP
                                  <br class="">
                                             
                                  aIZZJgRZu8tBDeSjroqbj_PoevFoFp<wbr
                                    class="">I&e=<br class="">
                                  <br class="">
                                  <br class="">
                                  <br class="">
                                  ##############################<wbr
                                    class="">##############################<wbr
                                    class="">############<br class="">
                                        Use REPLY-ALL to reply to list<br
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                                  <br class="">
                                        To unsubscribe from the
                                  HPS-SOFTWARE list, click the following
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href="https://urldefense.proofpoint.com/v2/url?u=https-3A__listserv.slac.stanford.edu_cgi-2Dbin"
                                    rel="noreferrer" target="_blank"
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                                  <br class="">
                                  _wa-3FSUBED1-3DHPS-2DSOFTWARE-<wbr
                                    class="">26A-3D1&d=DwIDaQ&c=lz9TcOasaIN<wbr
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                                  18s&r=0HDJrGO9TZQTE97J9Abt2A&m<wbr
                                    class="">=xnbGP5VHYWRAQRWRksVgMnYvBkXWI<wbr
                                    class="">4roLxztdJ0Tp9I&s=ppNYedSrn5DP
                                  <br class="">
                                        aIZZJgRZu8tBDeSjroqbj_PoevFoFp<wbr
                                    class="">I&e=<br class="">
                                  <br class="">
                                  <br class="">
                                  <br class="">
                                  ______________________________<wbr
                                    class="">______________________________<wbr
                                    class="">______________________________
                                  <br class="">
                                  <br class="">
                                  Use REPLY-ALL to reply to list<br
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                                  To unsubscribe from the HPS-SOFTWARE
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                                    class="">v.slac.stanford.edu_cgi-2Dbin_<wbr
                                    class="">wa-3FSUBED1-3DHPS-2DSOFTWARE-<wbr
                                    class="">26A-3D1&d=DwIDbA&c=lz9TcOasaIN<wbr
                                    class="">aaC3U7FbMev2lsutwpI4--<wbr
                                    class="">09aP8Lu18s&r=0HDJrGO9TZQTE97J9<wbr
                                    class="">Abt2A&m=nIEvNWJSNxvmECWKfMrVKM<wbr
                                    class="">TZKNdym3zsAls7WG1fdfU&s=cI82nY<wbr
                                    class="">RtYBzgLs1l5g3anHrSt0kPk4B98oUz<wbr
                                    class="">llu5KfQ&e=</a>
                                <br class="">
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                                <br class="">
                                <br class="">
                              </blockquote>
                              <div class="quoted-text"><br class="">
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                                rel="noreferrer" target="_blank"
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          </div>
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