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<p>​Hello Maurik,</p>
<p><br>
</p>
<p>Have you been able to run the profiler under equivalent conditions with the two jar files yet?</p>
<div><br>
</div>
<div>Norman<br>
</div>
<p><br>
</p>
<div style="word-wrap:break-word">
<hr tabindex="-1" style="display:inline-block; width:98%">
<div id="divRplyFwdMsg" dir="ltr"><font color="#000000" face="Calibri, sans-serif" style="font-size:11pt"><b>From:</b> hps-software@slac.stanford.edu <hps-software@slac.stanford.edu> on behalf of Maurik Holtrop <maurik@physics.unh.edu><br>
<b>Sent:</b> Sunday, May 21, 2017 7:04 AM<br>
<b>To:</b> Rafayel Paremuzyan<br>
<b>Cc:</b> Alessandra Filippi; hps-software; hps-analysis@jlab.org<br>
<b>Subject:</b> Re: Test pass1 Status</font>
<div> </div>
</div>
<div>Hello Rafo,
<div><br>
</div>
<div>One thing that probably <i>is</i> different between the last time we ran with the 3.8 jar and now is a different version of the Java VM. It could well be that the newer version of Java is not faster. Also, it is tricky to compare Endeavour with the Jlab
farm computers. They are probably not equivalent in speed. At UNH, Pumpkin has the more modern processors, whereas Endeavour is now ~5 years old.</div>
<div><br>
</div>
<div>Best,</div>
<div><span class="Apple-tab-span" style="white-space:pre"></span>Maurik</div>
<div> <br>
<div>
<blockquote type="cite">
<div>On May 21, 2017, at 6:54 AM, Rafayel Paremuzyan <<a href="mailto:rafopar@jlab.org">rafopar@jlab.org</a>> wrote:</div>
<br class="Apple-interchange-newline">
<div><font size="+1" style="font-family:'Liberation Sans'; font-style:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)">Hi Alessandra,
Norman, all<br>
<br>
thank you for replay and your tests.<br>
<br>
I tested both 2015 and 2016 data using v4-4 detector on UNH computers.<br>
I have use 3.8 JAR (the jar for 2015 pass6). 3.9 JAR (the jar for 2016 pass0 recon), and the NEW jar v051717 (the newest jar tag is v051717)<br>
<br>
Ok, I also noticed that recon of 2015 data is faster that 2016 data.<span class="Apple-converted-space"> </span><br>
Also seems the new jar is 20% slower than the 3.9 jar for 2016 data, and about 60% slower for 2015 data.<br>
now recon speed is about 2.55 EV/S for 2015 data, This is too slow<br>
it cause more than 40h for a single file.<br>
<br>
Ths is summary of code speeds with different jar files</font><br style="font-family:'Liberation Sans'; font-style:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)">
<table style="font-family:'Liberation Sans'; font-size:x-small; letter-spacing:normal; orphans:auto; text-indent:0px; text-transform:none; widows:auto; word-spacing:0px; background-color:rgb(255,255,255)" border="0" cellspacing="0">
<colgroup width="214"></colgroup><colgroup width="266"></colgroup><colgroup width="301">
</colgroup><colgroup width="294"></colgroup>
<tbody style="font-family:'Liberation Sans'; font-size:x-small">
<tr style="font-family:'Liberation Sans'; font-size:x-small">
<td height="25" align="center" valign="middle" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)" colspan="4">
<font face="Sylfaen" size="4">V4-4 Detector, UNH (endeavour), 5K events are reconstructed</font></td>
</tr>
<tr style="font-family:'Liberation Sans'; font-size:x-small">
<td height="25" align="center" valign="middle" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4"><br>
</font></td>
<td align="left" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4">Events per second</font></td>
<td align="left" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4">Events per second</font></td>
<td align="left" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4">Events per second</font></td>
</tr>
<tr style="font-family:'Liberation Sans'; font-size:x-small">
<td height="25" align="left" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4"><br>
</font></td>
<td align="left" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4">3.8JAR (2015 recon jar)</font></td>
<td align="left" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4">3.9JAR, 2016 pass0 recon jar</font></td>
<td align="left" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4">v051717JAR, jar vor tpass1</font></td>
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<tr style="font-family:'Liberation Sans'; font-size:x-small">
<td height="25" align="left" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4">2015 Data 5772, file 20</font></td>
<td align="right" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4">5.07</font></td>
<td align="right" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4">5.19</font></td>
<td align="right" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4">3.157</font></td>
</tr>
<tr style="font-family:'Liberation Sans'; font-size:x-small">
<td height="25" align="left" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4">2016 Data file 25</font></td>
<td align="left" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4"><br>
</font></td>
<td align="right" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4">3.11</font></td>
<td align="right" style="font-family:'Liberation Sans'; font-size:x-small; border:1px solid rgb(0,0,0)">
<font face="Sylfaen" size="4">2.53</font></td>
</tr>
</tbody>
</table>
<font size="+1" style="font-family:'Liberation Sans'; font-style:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)"><br>
<br>
*However* I looked into job Wall times for pass0 recon.<br>
The recon speed is more than 7.4 Events/sec, which is about x3 faster than with the new JAR.<br>
<br>
I again checked *same 3.9 jar*, which is slower again.<br>
I don't know why now the code speed is so low!<br>
<br>
<br>
Norman, I have tried the "-DdisableSvtAlignmentConstants", but it didn't work<br>
<br>
=================The command===============<br>
java -XX:+UseSerialGC -cp hps-distribution-3.11-v051717-bin.jar org.hps.evio.EvioToLcio -x /org/hps/steering/recon/PhysicsRun2016FullRecon.lcsim -r -d HPS-PhysicsRun2016-v5-3-fieldmap_globalAlign -R 7796 -DoutputFile=out_7796_0 -DdisableSvtAlignmentConstants
hps_007796.evio.25 -n 10000<br>
<br>
============The error backtrache============<br>
2017-05-21 00:45:39 [CONFIG] org.hps.evio.EvioToLcio parse :: using steering resource /org/hps/steering/recon/PhysicsRun2016FullRecon.lcsim<br>
2017-05-21 00:45:39 [CONFIG] org.hps.evio.EvioToLcio parse :: set max events to 10000<br>
2017-05-21 00:45:48 [INFO] org.hps.rundb.RunManager <init> :: ConnectionParameters { database: hps_run_db_v2, hostname:<span class="Apple-converted-space"> </span><a href="http://hpsdb.jlab.org/">hpsdb.jlab.org</a>, password: darkphoton, port: 3306, user: hpsuser
}<br>
2017-05-21 00:45:48 [CONFIG] org.lcsim.job.JobControlManager addVariableDefinition :: outputFile = out_7796_0<br>
2017-05-21 00:45:48 [CONFIG] org.hps.evio.EvioToLcio parse :: set steering variable: outputFile=out_7796_0<br>
2017-05-21 00:45:48 [SEVERE] org.hps.evio.EvioToLcio parse :: bad variable format: disableSvtAlignmentConstants<br>
java.lang.IllegalArgumentException: Bad variable format: disableSvtAlignmentConstants<br>
at org.hps.evio.EvioToLcio.parse(EvioToLcio.java:393)<br>
at org.hps.evio.EvioToLcio.main(EvioToLcio.java:97)<br>
<br>
Exception in thread "main" java.lang.IllegalArgumentException: Bad variable format: disableSvtAlignmentConstants<br>
at org.hps.evio.EvioToLcio.parse(EvioToLcio.java:393)<br>
at org.hps.evio.EvioToLcio.main(EvioToLcio.java:97)<br>
<br>
Rafo<br>
</font><br style="font-family:'Liberation Sans'; font-style:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)">
<br style="font-family:'Liberation Sans'; font-style:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)">
<br style="font-family:'Liberation Sans'; font-style:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)">
<br style="font-family:'Liberation Sans'; font-style:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)">
<br style="font-family:'Liberation Sans'; font-style:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)">
<br style="font-family:'Liberation Sans'; font-style:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)">
<div class="moz-cite-prefix" style="font-family:'Liberation Sans'; font-size:x-small; font-style:normal; font-weight:normal; letter-spacing:normal; text-align:start; text-indent:0px; text-transform:none; white-space:normal; word-spacing:0px; background-color:rgb(255,255,255)">
On 05/20/2017 06:17 AM, Alessandra Filippi wrote:<br>
</div>
<blockquote style="font-family:'Liberation Sans'; font-style:normal; font-weight:normal; letter-spacing:normal; orphans:auto; text-align:start; text-indent:0px; text-transform:none; white-space:normal; widows:auto; word-spacing:0px; background-color:rgb(255,255,255)" type="cite">
Hi Rafo, all,<span class="Apple-converted-space"> </span><br>
I also noticed that the reconstruction for 2016 data is about twice as slow as compared to 2015 (whichever geometry and reconstruction version).<span class="Apple-converted-space"> </span><br>
This happens when I run the aligned geometry as well as the "current" one (v5.0), and the geometry taken from the db as well (the result is the same as v5.0). I did not make any test with v4.4, though - actually as far as svt alignment is concerned it should
be the same as v5.0. Can you please try and make the same short test with the newest jar with v4.4?<span class="Apple-converted-space"> </span><br>
This happens to me both with hps-java 5.10 and 5.11 (not the most updated one).<span class="Apple-converted-space"> </span><br>
<br>
I would be surprised if it could be something connected to the alignment, unless for some reason new positions and harder tracks trigger some long loops in the reconstruction. But this happens (to me) also with the<span class="Apple-converted-space"> </span><br>
standard geometry, so a check with the one used with pass0 (that should however be equivalent to v5.0) could at least help to rule out, or blame on, the alignment step.<span class="Apple-converted-space"> </span><br>
Thanks, cheers<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>Alessandra<span class="Apple-converted-space"> </span><br>
<br>
<br>
ps. make also sure that the correct fieldmap is called in all the compact files - you never know!<span class="Apple-converted-space"> </span><br>
<br>
<br>
<br>
On Fri, 19 May 2017, Rafayel Paremuzyan wrote:<span class="Apple-converted-space"> </span><br>
<br>
<blockquote type="cite">Hi All,<span class="Apple-converted-space"> </span><br>
<br>
During the testing the recon for test pass1,<span class="Apple-converted-space"> </span><br>
I noticed the recon time is more than x2 longer wrt pass0 recon time.<span class="Apple-converted-space"> </span><br>
<br>
To demonstrate it<span class="Apple-converted-space"> </span><br>
I submit 3 simple jobs with 10K events to reconstruct, with new pass1 xml<span class="Apple-converted-space"> </span><br>
file (this has the new jar v051717, and the new detector<span class="Apple-converted-space"> </span><br>
HPS-PhysicsRun2016-v5-3-fieldmap_globalAlign),<span class="Apple-converted-space"> </span><br>
and the old pass0 xml file (pass0 jar release 3.9, and the detector<span class="Apple-converted-space"> </span><br>
HPS-PhysicsRun2016-Nominal-v4-4-fieldmap)<span class="Apple-converted-space"> </span><br>
<br>
Below is a printout from the jobs with a new JAR, v051717, the average time<span class="Apple-converted-space"> </span><br>
for 1000 events is more than 7 minutes<span class="Apple-converted-space"> </span><br>
===================== LOG from the v051717 JAR<span class="Apple-converted-space"> </span><br>
==============================<span class="Apple-converted-space"> </span><br>
2017-05-19 09:36:51 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10614074 with sequence 0<span class="Apple-converted-space"> </span><br>
2017-05-19 09:43:13 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10615074 with sequence 1000<span class="Apple-converted-space"> </span><br>
2017-05-19 09:49:18 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10616074 with sequence 2000<span class="Apple-converted-space"> </span><br>
2017-05-19 09:55:54 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10617074 with sequence 3000<span class="Apple-converted-space"> </span><br>
2017-05-19 10:02:55 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10618074 with sequence 4000<span class="Apple-converted-space"> </span><br>
2017-05-19 10:09:57 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10619074 with sequence 5000<span class="Apple-converted-space"> </span><br>
2017-05-19 10:16:13 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10620074 with sequence 6000<span class="Apple-converted-space"> </span><br>
2017-05-19 10:25:20 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10621074 with sequence 7000<span class="Apple-converted-space"> </span><br>
2017-05-19 10:32:56 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10622074 with sequence 8000<span class="Apple-converted-space"> </span><br>
2017-05-19 10:36:19 [WARNING] org.hps.recon.tracking.TrackerReconDriver<span class="Apple-converted-space"> </span><br>
process :: Discarding track with bad HelicalTrackHit (correction distance<span class="Apple-converted-space"> </span><br>
0.000000, chisq penalty 0.000000)<span class="Apple-converted-space"> </span><br>
2017-05-19 10:42:03 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10623074 with sequence 9000<span class="Apple-converted-space"> </span><br>
2017-05-19 10:47:44 [INFO] org.hps.evio.EvioToLcio run :: maxEvents 10000<span class="Apple-converted-space"> </span><br>
was reached<span class="Apple-converted-space"> </span><br>
2017-05-19 10:47:44 [INFO] org.lcsim.job.EventMarkerDriver endOfData ::<span class="Apple-converted-space"> </span><br>
10000 events processed in job.<span class="Apple-converted-space"> </span><br>
2017-05-19 10:47:44 [INFO] org.hps.evio.EvioToLcio run :: Job finished<span class="Apple-converted-space"> </span><br>
successfully!<span class="Apple-converted-space"> </span><br>
<br>
<br>
And below is the Job log info from the pass0 jar. The average time for 1000<span class="Apple-converted-space"> </span><br>
events is less than 3 minutes<span class="Apple-converted-space"> </span><br>
===================== LOG from the 3.9 release JAR<span class="Apple-converted-space"> </span><br>
==============================<span class="Apple-converted-space"> </span><br>
2017-05-19 13:19:46 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10614074 with sequence 0<span class="Apple-converted-space"> </span><br>
2017-05-19 13:23:36 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10615074 with sequence 1000<span class="Apple-converted-space"> </span><br>
2017-05-19 13:27:03 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10616074 with sequence 2000<span class="Apple-converted-space"> </span><br>
2017-05-19 13:30:40 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10617074 with sequence 3000<span class="Apple-converted-space"> </span><br>
2017-05-19 13:34:20 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10618074 with sequence 4000<span class="Apple-converted-space"> </span><br>
2017-05-19 13:38:11 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10619074 with sequence 5000<span class="Apple-converted-space"> </span><br>
2017-05-19 13:41:43 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10620074 with sequence 6000<span class="Apple-converted-space"> </span><br>
2017-05-19 13:45:54 [WARNING] org.hps.recon.tracking.TrackerReconDriver<span class="Apple-converted-space"> </span><br>
process :: Discarding track with bad HelicalTrackHit (correction distance<span class="Apple-converted-space"> </span><br>
0.000000, chisq penalty 0.000000)<span class="Apple-converted-space"> </span><br>
2017-05-19 13:46:05 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10621074 with sequence 7000<span class="Apple-converted-space"> </span><br>
2017-05-19 13:50:08 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10622074 with sequence 8000<span class="Apple-converted-space"> </span><br>
2017-05-19 13:55:03 [INFO] org.lcsim.job.EventMarkerDriver process :: Event<span class="Apple-converted-space"> </span><br>
10623074 with sequence 9000<span class="Apple-converted-space"> </span><br>
2017-05-19 13:58:27 [INFO] org.hps.evio.EvioToLcio run :: maxEvents 10000<span class="Apple-converted-space"> </span><br>
was reached<span class="Apple-converted-space"> </span><br>
2017-05-19 13:58:27 [INFO] org.lcsim.job.EventMarkerDriver endOfData ::<span class="Apple-converted-space"> </span><br>
10000 events processed in job.<span class="Apple-converted-space"> </span><br>
2017-05-19 13:58:27 [INFO] org.hps.evio.EvioToLcio run :: Job finished<span class="Apple-converted-space"> </span><br>
successfully!<span class="Apple-converted-space"> </span><br>
<br>
I also tried to do reconstruction by myself interactively, but I am getting<span class="Apple-converted-space"> </span><br>
error below,<span class="Apple-converted-space"> </span><br>
<br>
The command<span class="Apple-converted-space"> </span><br>
/apps/scicomp/java/jdk1.7/bin/java -XX:+UseSerialGC -cp<span class="Apple-converted-space"> </span><br>
hps-distribution-3.9-bin.jar org.hps.evio.EvioToLcio -x<span class="Apple-converted-space"> </span><br>
/org/hps/steering/recon/PhysicsRun2016FullRecon.lcsim -r -d<span class="Apple-converted-space"> </span><br>
HPS-PhysicsRun2016-v5-3-fieldmap_globalAlign -R 7796 -DoutputFile=out_7796_0<span class="Apple-converted-space"> </span><br>
hps_007796.evio.0 -n 10000<span class="Apple-converted-space"> </span><br>
<br>
The Error traceback<span class="Apple-converted-space"> </span><br>
017-05-19 14:58:44 [CONFIG] org.hps.evio.EvioToLcio parse :: using steering<span class="Apple-converted-space"> </span><br>
resource /org/hps/steering/recon/PhysicsRun2016FullRecon.lcsim<span class="Apple-converted-space"> </span><br>
2017-05-19 14:58:44 [CONFIG] org.hps.evio.EvioToLcio parse :: set max events<span class="Apple-converted-space"> </span><br>
to 10000<span class="Apple-converted-space"> </span><br>
2017-05-19 14:58:45 [CONFIG] org.lcsim.job.JobControlManager<span class="Apple-converted-space"> </span><br>
addVariableDefinition :: outputFile = out_7796_0<span class="Apple-converted-space"> </span><br>
2017-05-19 14:58:45 [CONFIG] org.hps.evio.EvioToLcio parse :: set steering<span class="Apple-converted-space"> </span><br>
variable: outputFile=out_7796_0<span class="Apple-converted-space"> </span><br>
2017-05-19 14:58:45 [CONFIG] org.lcsim.job.JobControlManager initializeLoop<span class="Apple-converted-space"> </span><br>
:: initializing LCSim loop<span class="Apple-converted-space"> </span><br>
2017-05-19 14:58:45 [CONFIG] org.lcsim.job.JobControlManager initializeLoop<span class="Apple-converted-space"> </span><br>
:: Event marker printing disabled.<span class="Apple-converted-space"> </span><br>
2017-05-19 14:58:45 [INFO]<span class="Apple-converted-space"> </span><br>
org.hps.conditions.database.DatabaseConditionsManager resetInstance ::<span class="Apple-converted-space"> </span><br>
DatabaseConditionsManager instance is reset<span class="Apple-converted-space"> </span><br>
Exception in thread "main" java.lang.UnsatisfiedLinkError:<span class="Apple-converted-space"> </span><br>
/u/apps/scicomp/java/jdk1.7.0_75/jre/lib/i386/xawt/libmawt.so: libXext.so.6:<span class="Apple-converted-space"> </span><br>
cannot open shared object file: No such file or directory<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.lang.ClassLoader$NativeLibrary.load(Native Method)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.lang.ClassLoader.loadLibrary1(ClassLoader.java:1965)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1890)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1851)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.lang.Runtime.load0(Runtime.java:795)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.lang.System.load(System.java:1062)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.lang.ClassLoader$NativeLibrary.load(Native Method)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.lang.ClassLoader.loadLibrary1(ClassLoader.java:1965)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.lang.ClassLoader.loadLibrary0(ClassLoader.java:1890)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.lang.ClassLoader.loadLibrary(ClassLoader.java:1872)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.lang.Runtime.loadLibrary0(Runtime.java:849)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.lang.System.loadLibrary(System.java:1088)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at<span class="Apple-converted-space"> </span><br>
sun.security.action.LoadLibraryAction.run(LoadLibraryAction.java:67)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at<span class="Apple-converted-space"> </span><br>
sun.security.action.LoadLibraryAction.run(LoadLibraryAction.java:47)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.security.AccessController.doPrivileged(Native Method)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.awt.Toolkit.loadLibraries(Toolkit.java:1653)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.awt.Toolkit.<clinit>(Toolkit.java:1682)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.awt.Component.<clinit>(Component.java:595)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at org.lcsim.util.aida.AIDA.<init>(AIDA.java:68)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at org.lcsim.util.aida.AIDA.defaultInstance(AIDA.java:53)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at org.hps.evio.RfFitterDriver.<init>(RfFitterDriver.java:31)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native<span class="Apple-converted-space"> </span><br>
Method)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>atsun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAcce<br>
ssorImpl.java:57)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>atsun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstru<br>
ctorAccessorImpl.java:45)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.lang.reflect.Constructor.newInstance(Constructor.java:526)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at java.lang.Class.newInstance(Class.java:379)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at<span class="Apple-converted-space"> </span><br>
org.lcsim.job.JobControlManager.setupDrivers(JobControlManager.java:1199)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at org.hps.job.JobManager.setupDrivers(JobManager.java:82)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at<span class="Apple-converted-space"> </span><br>
org.lcsim.job.JobControlManager.setup(JobControlManager.java:1052)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at<span class="Apple-converted-space"> </span><br>
org.lcsim.job.JobControlManager.setup(JobControlManager.java:1110)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at org.hps.evio.EvioToLcio.parse(EvioToLcio.java:407)<span class="Apple-converted-space"> </span><br>
<span class="Apple-converted-space"> </span>at org.hps.evio.EvioToLcio.main(EvioToLcio.java:97)<span class="Apple-converted-space"> </span><br>
<br>
<br>
<br>
I see this library libXext.so.6: in /usr/lib64, but not in /usr/lib,<span class="Apple-converted-space"> </span><br>
when I put /usr/lib64 in my LD_LIBRARY_PATH, then it complaines again (see<span class="Apple-converted-space"> </span><br>
below)<span class="Apple-converted-space"> </span><br>
<br>
Exception in thread "main" java.lang.UnsatisfiedLinkError:<span class="Apple-converted-space"> </span><br>
/u/apps/scicomp/java/jdk1.7.0_75/jre/lib/i386/xawt/libmawt.so: libXext.so.6:<span class="Apple-converted-space"> </span><br>
wrong ELF class: ELFCLASS64<span class="Apple-converted-space"> </span><br>
<br>
I would appreciate, if I get some help on running the reconstruction<span class="Apple-converted-space"> </span><br>
interactively, then I could look more closely into logs<span class="Apple-converted-space"> </span><br>
of the old, and new JAR files.<span class="Apple-converted-space"> </span><br>
<br>
Rafo<span class="Apple-converted-space"> </span><br>
<br>
<br>
____________________________________________________________________________<span class="Apple-converted-space"> </span><br>
<br>
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