[Sane-analysis] Differing gen_run_.txt files and syncfilter executables

[Mark Jones]

> 
> - but there is a little mystery in the plot of charge difference vs
> threshold: initially BCM1 records more charge (consistent with its
> longer beam on time), the BCM's almost agree at 40 nA, but then BCM2
> starts recording MORE charge as the threshold increases, while the beam
> on time difference becomes zero, bottom plot. Any suggestions?
> 

The BCMs are calibrated separately so there is no reason to expect them 
to be the same when they are integrated over the same time period. The 
fact that they are closer at lower threshold is BECAUSE they have 
different times. But this doesn't mean that this is better.

It is a good idea to raise the BCM threshold to at least 60
since we didn't do the calibration below 85nA.

It is in the ENGINE so that the variables for the
helicity dependent charges for the BCM1 abd BCm2
can be calculated with a threshold on their respective BCM, but I didn't
put that in the greport.template. That will be updated.



                             Mark