[Clas_offline] user_ana

Will Phelps wphelps at jlab.org
Thu Mar 27 09:40:15 EDT 2014 

I would like to bring it up at the software meeting today. I would like to have a few more opinions on what should be done and how to proceed. It's today at 10:30am EST.

Also, fantastic quote! 
-Will

On Mar 26, 2014, at 11:53 AM, Nikolai Pivnyuk <pivnyuk at jlab.org> wrote:

> Will, do you have any objection to what Silvia has suggested ?
> 
> "THE MAN WHO MAKES NO MISTAKES DOES NOT USUALLY MAKE ANYTHING"
>                                                       PHELPS
> 
>> Hi Will,
>> Good to know that someone still has claslib permissions :-)
>> If I can give my opinion, I think that the specif fix under discussion
>> (the one that allows user_ana to be run on the batch farm) should be
>> included without further doubts in the official executable, as the one
>> there right now is basically useless, working only interactively. You
>> should just make sure that the only change in the packages since the last
>> build was that one.
>> Regards and thanks a lot for taking care of this.
>> Silvia
>> 
>> 
>> Sent from my iPhone
>> 
>>> On 26/mar/2014, at 16:26, Will Phelps <wphelps at jlab.org> wrote:
>>> 
>>> Hello Nikolai,
>>> I am the CLAS librarian and I am discussing what to do with the builds
>>> with Johann and Harut. So far it looks like I will not be changing the
>>> /group/clas/builds/ production build until everyone has been notified. I
>>> will create a separate build like /group/clas/builds/build_03_26_14/ or
>>> something similar for collaborators to test out before changing the
>>> production build. Any suggestions are welcome.
>>> -Will
>>> 
>>>> On Mar 26, 2014, at 11:20 AM, Nikolai Pivnyuk <pivnyuk at jlab.org> wrote:
>>>> 
>>>> 
>>>> 
>>>>> I don't have access to the claslib account anymore. I'm not sure who
>>>>> does.
>>>> 
>>>> 
>>>> 
>>>> Does anybody know "who does" ?
>>>> 
>>>> 
>>>> 
>>>>> If anyone wants to build the fixed version into /group/clas/builds,
>>>>> they
>>>>> could first log into ifarm1101 as claslib and run this:
>>>>> 
>>>>> cd /group/clas/builds/src/clas-trunk
>>>>> svn up
>>>>> scons -j32 install
>>>>> 
>>>>> 
>>>>> 
>>>>> 
>>>>> -- Johann <https://sites.google.com/site/theodoregoetz/>
>>>>> 
>>>>> 
>>>>> On Tue, Mar 25, 2014 at 4:25 PM, Francois-Xavier Girod
>>>>> <fxgirod at jlab.org>wrote:
>>>>> 
>>>>>> 
>>>>>> One would think that
>>>>>> /group/clas/builds/bin/user_ana
>>>>>> should be consistent with
>>>>>> /group/clas/builds/src/clas-trunk/reconstruction/recsis/retcl_yield.F
>>>>>> but this source file is not consistent with the svn repository.
>>>>>> 
>>>>>> /group/clas/builds/ is supposed to be updated manually (?).
>>>>>> 
>>>>>> Best regards,
>>>>>> FX
>>>>>> 
>>>>>> ----- Original Message -----
>>>>>> From: "Nikolai Pivnyuk" <pivnyuk at jlab.org>
>>>>>> To: "Johann Goetz" <theodore.goetz at gmail.com>
>>>>>> Cc: "clas offline" <clas_offline at jlab.org>
>>>>>> Sent: Tuesday, March 25, 2014 4:13:27 PM
>>>>>> Subject: Re: [Clas_offline] user_ana
>>>>>> 
>>>>>> Johann,
>>>>>> 
>>>>>> ???????
>>>>>> 
>>>>>> pivnyuk at ifarm1102:~>ll /group/clas/builds/bin/user_ana
>>>>>> -rwxrwxr-x 1 claslib clasdev 4225915 Dec 18 14:33
>>>>>> /group/clas/builds/bin/user_ana
>>>>>> 
>>>>>> 
>>>>>>> This modification has been in the SVN repository since January,
>>>>>>> 2014.
>>>>>>> https://jlabsvn.jlab.org/svnroot/clas/trunk
>>>>>>> 
>>>>>>> -- Johann <https://sites.google.com/site/theodoregoetz/>
>>>>>>> 
>>>>>>> 
>>>>>>>> On Tue, Mar 25, 2014 at 2:32 PM, Silvia Niccolai <silvia at jlab.org>
>>>>>>> wrote:
>>>>>>> 
>>>>>>>> Hello all,
>>>>>>>> Could this "trick" be implemented in the official clas-trunk, so
>>>>>>>> that
>>>>>>>> people don't have to check out, modify this routine and recompile
>>>>>>>> everything?
>>>>>>>> This issue has been known since about last summer...
>>>>>>>> Thanks
>>>>>>>> Silvia
>>>>>>>> 
>>>>>>>> Sent from my iPhone
>>>>>>>> 
>>>>>>>>> On 25/mar/2014, at 19:24, KiJun Park <parkkj at jlab.org> wrote:
>>>>>>>>> 
>>>>>>>>> Hi,
>>>>>>>>> 
>>>>>>>>> Perhaps your problem is related with source code not your input
>>>>>>>>> bos
>>>>>>>> file.
>>>>>>>>> Many people already noticed this problem without knowing the
>>>>>> reason.
>>>>>>>>> (You may see lots of communications in CLAS_OFFLINE account)
>>>>>>>>> The ifarm1102 and batch-farm are identical machines
>>>>>> (CENTOS6.2/64bit),
>>>>>>>> calling same LIBs,... etc.
>>>>>>>>> No one really does not know why the error is occurred in only
>>>>>>>>> batch
>>>>>>>> mode, meantime an interactive mode is working fine.
>>>>>>>>> 
>>>>>>>>> So far, there is a trick which is so far working.
>>>>>>>>> You may try this too.
>>>>>>>>> But this is not an ultimate solution.
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> The source code in "retcl_yield.F" has
>>>>>>>>> ---------------------------------------------------------
>>>>>>>>> c
>>>>>>>>> c look at the terminal input
>>>>>>>>> c
>>>>>>>>> IF (LINTER) THEN
>>>>>>>>> call asynck_c(nbyt)
>>>>>>>>> else
>>>>>>>>> nbyt = 1
>>>>>>>>> endif
>>>>>>>>> ---------------------------------------------------------
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>>>>>> change this "nbyt = 1" to  "nbyt = 0"
>>>>>>>>> 
>>>>>>>>> I know, this does not make any sense.
>>>>>>>>> Because in principle, the loop is going to be infinite when  "nbyt
>>>>>> =
>>>>>>>> 0"
>>>>>>>> is engaged.
>>>>>>>>> 
>>>>>>>>>      IF (LINTER) THEN
>>>>>>>>>          call asynck_c(nbyt)
>>>>>>>>>      else
>>>>>>>>>         nbyt = 1
>>>>>>>>>      endif
>>>>>>>>> 
>>>>>>>>> re-compile it and submit your job.
>>>>>>>>> good luck.
>>>>>>>>> 
>>>>>>>>> Sincerely yours,
>>>>>>>>> Kijun
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> ----- Original Message -----
>>>>>>>>> From: "Nikolai Pivnyuk" <pivnyuk at jlab.org>
>>>>>>>>> To: "clas offline" <clas_offline at jlab.org>
>>>>>>>>> Sent: Tuesday, March 25, 2014 2:14:50 PM
>>>>>>>>> Subject: [Clas_offline] user_ana
>>>>>>>>> 
>>>>>>>>> Dear CLAS offliners,
>>>>>>>>> 
>>>>>>>>> I have a problem with running user_ana on batch farm nodes.
>>>>>>>>> To launch the job I currently use the same scripts which I have
>>>>>> used a
>>>>>>>> few
>>>>>>>>> years ago without any problem. These scripts are
>>>>>>>>> /volatile/clas/clasg10/pivnyuk/g10/mc/batch_pipp/send_to_farm.pl
>>>>>>>>> and
>>>>>>>>> /volatile/clas/clasg10/pivnyuk/g10/mc/batch_pipp/runmc.pl
>>>>>>>>> In runmc.pl see just only quite small "recsis" block of the
>>>>>>>>> script.
>>>>>>>>> ---------------------------------------------------------------------
>>>>>>>>> The problem looks likely as the input file
>>>>>> /volatile/clas/clasg10/pivnyuk/g10/mc/outdir_pimi_p_resc_dc_0.02_de_0.08/eg_2.90/gpp0004.bos
>>>>>>>>> is invisible for the user_ana.
>>>>>>>>> It is just only my impression. I'm not absolutely sure about that.
>>>>>>>>> ----------------------------------------------------------------------
>>>>>>>>> Processing the same gpp0004.bos with user_ana but in INTERACTIVE
>>>>>> MODE
>>>>>>>> is
>>>>>>>>> absolutely OK. No problem.
>>>>>> -----------------------------------------------------------------------
>>>>>>>>> More details (.tcl and output .log files etc.) are in the
>>>>>> "user_ana"
>>>>>>>>> attached file.
>>>>>> ------------------------------------------------------------------------
>>>>>>>>> Could somebody kindly have a look on my stuff ?
>>>>>>>>> Thanks in advance,
>>>>>>>>> Nikolai
>>>>>>>>> _______________________________________________
>>>>>>>>> Clas_offline mailing list
>>>>>>>>> Clas_offline at jlab.org
>>>>>>>>> https://mailman.jlab.org/mailman/listinfo/clas_offline
>>>>>>>>> 
>>>>>>>>> --
>>>>>>>>> ---------------------------------------******
>>>>>>>>> Dr. Kijun Park
>>>>>>>>> Physics Dept. Old Dominion University
>>>>>>>>> Thomas Jefferson National Accelerator Facility
>>>>>>>>> Suit 5 Room 12_1/A102
>>>>>>>>> 12000 Jefferson Ave.
>>>>>>>>> Newport News VA 23606
>>>>>>>>> Phone 757-269-6989
>>>>>>>>> 
>>>>>>>>> _______________________________________________
>>>>>>>>> Clas_offline mailing list
>>>>>>>>> Clas_offline at jlab.org
>>>>>>>>> https://mailman.jlab.org/mailman/listinfo/clas_offline
>>>>>>>> 
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>>>>>> 
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