[Halld-offline] reconstructing an evio file
Mark M. Ito
marki at jlab.org
Tue Aug 26 15:58:28 EDT 2014
Folks,
Getting crashes trying to reconstruct an evio. See the attached
transcript. The command used is highlighted with "==="s. Using the
latest sim-recon, latest constants. Looks like an issue with the CDC
geometry. Does this look familiar to anyone?
-- Mark
--
Mark M. Ito, Jefferson Lab, marki at jlab.org, (757)269-5295
-------------- next part --------------
===gluex_env.csh report===
BMS_OSNAME = Linux_RHEL6-x86_64-gcc4.4.7
BUILD_SCRIPTS = /home/marki/convert_hddm_to_evio/build_scripts
CERN_ROOT = /group/halld/Software/ExternalPackages/cernlib/Linux_CentOS6-x86_64-gcc4.4.6/2005
CLHEP = /group/halld/Software/builds/clhep/2.0.4.5/Linux_RHEL6-x86_64-gcc4.4.7
GLUEX_TOP = /usr/local/gluex
HALLD_HOME = /home/marki/convert_hddm_to_evio/sim-recon
HALLD_MY = /home/marki/halld_my
HDDS_HOME = /usr/local/gluex/hdds/prod
JANA_CALIB_URL = mysql://ccdb_user@hallddb.jlab.org/ccdb
JANA_GEOMETRY_URL = xmlfile:///usr/local/gluex/hdds/prod/main_HDDS.xml
JANA_HOME = /usr/local/gluex/jana/prod/Linux_RHEL6-x86_64-gcc4.4.7
LD_LIBRARY_PATH = /usr/local/gluex/ccdb/prod/lib:/group/halld/Software/builds/clhep/2.0.4.5/Linux_RHEL6-x86_64-gcc4.4.7/lib:/group/halld/Software/ExternalPackages/ROOT/v5.34.01/root_Linux_CentOS6-x86_64-gcc4.4.6/lib:/group/halld/Software/ExternalPackages/xerces-c-3.1.1.Linux_RHEL6-x86_64-gcc4.4.7/lib:/home/marki/convert_hddm_to_evio/evio-4.3/Linux-x86_64/lib:/usr/local/gsl/prod/lib:/usr/local/gluex/ccdb/prod/lib:/usr/local/gluex/clhep/prod/lib:/usr/local/gluex/root/prod/lib:/usr/local/gluex/xerces-c/prod/lib:
PATH = /usr/local/gluex/ccdb/prod/bin:/home/marki/convert_hddm_to_evio/sim-recon/Linux_RHEL6-x86_64-gcc4.4.7/bin:/group/halld/Software/ExternalPackages/cernlib/Linux_CentOS6-x86_64-gcc4.4.6/2005/bin:/group/halld/Software/ExternalPackages/ROOT/v5.34.01/root_Linux_CentOS6-x86_64-gcc4.4.6/bin:/usr/local/gluex/ccdb/prod/bin:/home/marki/halld_my/Linux_RHEL6-x86_64-gcc4.4.7/bin:/usr/local/gluex/sim-recon/prod/Linux_RHEL6-x86_64-gcc4.4.7/bin:/usr/local/gluex/cernlib/2005/bin:/usr/local/gluex/root/prod/bin:.:/home/marki/bin:/site/bin:/apps/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/bin
ROOTSYS = /group/halld/Software/ExternalPackages/ROOT/v5.34.01/root_Linux_CentOS6-x86_64-gcc4.4.6
XERCESCROOT = /group/halld/Software/ExternalPackages/xerces-c-3.1.1.Linux_RHEL6-x86_64-gcc4.4.7
CCDB_HOME = /usr/local/gluex/ccdb/prod
===
=== hd_root -PPLUGINS=DAQ,TTab,monitoring_hists,danarest rawevent_009004.evio
===
JANA >>OUTPUT_FILENAME: hd_root.root
JANA >>Initializing plugin "/home/marki/convert_hddm_to_evio/sim-recon/Linux_RHEL6-x86_64-gcc4.4.7/plugins/DAQ.so" ...
JANA >>Initializing plugin "/home/marki/convert_hddm_to_evio/sim-recon/Linux_RHEL6-x86_64-gcc4.4.7/plugins/TTab.so" ...
JANA >>Initializing plugin "/home/marki/convert_hddm_to_evio/sim-recon/Linux_RHEL6-x86_64-gcc4.4.7/plugins/monitoring_hists.so" ...
JANA >>Initializing plugin "/home/marki/convert_hddm_to_evio/sim-recon/Linux_RHEL6-x86_64-gcc4.4.7/plugins/danarest.so" ...
Opened ROOT file "hd_root.root" ...
JANA >>Opening source "rawevent_009004.evio" of type: EVIO - Reads EVIO formatted data from file or ET system
JANA >>Launching threads .
JANA >>Created JCalibration object of type: JCalibrationCCDB
JANA >>Generated via: JCalibration using CCDB for MySQL and SQLite databases
JANA >>Run:9004
JANA >>URL: mysql://ccdb_user@hallddb.jlab.org/ccdb
JANA >>context: default
JANA >>Reading translation table from calib DB: Translation/DAQ2detector ...
1.0 events processed (11.0 events read) 2.0Hz (avg.: 0.0Hz)
JANA >>22821 channels defined in translation table
Created TGeoManager :0x7ff2121cee80
1.0 events processed (11.0 events read) 0.0Hz (avg.: 0.0Hz)
JANA >>Creating DGeometry:
JANA >> Run requested:9004 found:9004
JANA >> Run validity range: 9004-9004
JANA >> URL="xmlfile:///usr/local/gluex/hdds/prod/main_HDDS.xml" context="default"
JANA >> Type="JGeometryXML"
DParticleID: loading values from PID data base
1.0 events processed (11.0 events read) 0.0Hz (avg.: 0.0Hz)
JANA >>Created JCalibration object of type: JCalibrationCCDB
JANA >>Generated via: JCalibration using CCDB for MySQL and SQLite databases
JANA >>Run:1
JANA >>URL: mysql://ccdb_user@hallddb.jlab.org/ccdb
JANA >>context: default
JANA >>Reading Magnetic field map from Magnets/Solenoid/solenoid_1350_poisson_20130925 ...
1.0 events processed (11.0 events read) 0.0Hz (avg.: 0.0Hz)
1.0 events processed (11.0 events read) 0.0Hz (avg.: 0.0Hz)
1.0 events processed (11.0 events read) 0.0Hz (avg.: 0.0Hz)
1.0 events processed (11.0 events read) 0.0Hz (avg.: 0.0Hz)
1.0 events processed (11.0 events read) 0.0Hz (avg.: 0.0Hz)
Nx=251 Ny=1 Nz=701 ) at 0x7ff1f29cf500
Reading fine-mesh B-field data from finemesh.evio
1.0 events processed (11.0 events read) 0.0Hz (avg.: 0.0Hz)
1.0 events processed (11.0 events read) 0.0Hz (avg.: 0.0Hz)
rmin: 0 rmax: 88.5 dr: 0.1 zmin: 0 zmax: 600 dz: 0.1
Number of points in z = 6000
Number of points in r = 885
JANA >>175951 entries found (Created Magnetic field map of type DMagneticFieldMapFineMesh.
JANA >>Read 840 values from FDC/lorentz_deflections in calibDB
JANA >> lorentz_deflections columns (alphabetical): bx bz nx nz x z
1.0 events processed (11.0 events read) 0.0Hz (avg.: 0.0Hz)
JANA >>vertex constraint: <none>
src/JANA/JGeometryXML.cc:204 Node or attribute not found for xpath "//mposPhi[@volume='CDCstrawLong']/@R_Z/ring[@value='6']".
1.0 events processed (11.0 events read) 0.0Hz (avg.: 0.0Hz)
src/JANA/JGeometryXML.cc:204 Node or attribute not found for xpath "//mposPhi[@volume='CDCstrawLong']/@R_Z/ring[@value='6']".
src/JANA/JGeometryXML.cc:204 Node or attribute not found for xpath "//mposPhi[@volume='CDCstrawLong']/@R_Z/ring[@value='6']".
JANA >>In DFCALHit_factory, loading constants...
1.0 events processed (11.0 events read) 0.0Hz (avg.: 0.0Hz)
JANA >> Factory Call Stack
JANA >>============================
JANA >> DCDCHit: (evnt) -- line:279 /home/gluex/gluex/jana/jana_0.7.1p1/Linux_RHEL6-x86_64-gcc4.4.7/include/JANA/JFactory.h
JANA >> DCDCHit
JANA >> DCDCTrackHit:CDC (evnt) -- line:279 /u/group/halld/Software/builds/jana/jana_0.7.1p3-ccdb_1.02/Linux_RHEL6-x86_64-gcc4.4.7/include/JANA/JFactory.h
JANA >> DCDCTrackHit
JANA >> DTrackCandidate:CDC (evnt) -- line:279 /home/gluex/gluex/jana/jana_0.7.1p1/Linux_RHEL6-x86_64-gcc4.4.7/include/JANA/JFactory.h
JANA >> DTrackCandidate:CDC
JANA >> DTrackCandidate: (evnt) -- line:279 /home/gluex/gluex/jana/jana_0.7.1p1/Linux_RHEL6-x86_64-gcc4.4.7/include/JANA/JFactory.h
JANA >> DTrackCandidate
JANA >> DTrackWireBased: (evnt) -- line:279 /home/gluex/gluex/jana/jana_0.7.1p1/Linux_RHEL6-x86_64-gcc4.4.7/include/JANA/JFactory.h
JANA >> DTrackWireBased
JANA >> DTrackTimeBased:DTrackWireBased -- line:279 /home/gluex/gluex/jana/jana_0.7.1p1/Linux_RHEL6-x86_64-gcc4.4.7/include/JANA/JFactory.h
JANA >> DTrackTimeBased
JANA >> DChargedTrackHypothesis:DCDCTrackHit -- line:279 /home/gluex/gluex/jana/jana_0.7.1p1/Linux_RHEL6-x86_64-gcc4.4.7/include/JANA/JFactory.h
JANA >> DChargedTrackHypothesis
JANA >> DChargedTrack:DCDCTrackHit -- line:279 /home/gluex/gluex/jana/jana_0.7.1p1/Linux_RHEL6-x86_64-gcc4.4.7/include/JANA/JFactory.h
JANA >> DChargedTrack
JANA >> DParticleComboBlueprint:DCDCHit -- line:279 /home/gluex/gluex/jana/jana_0.7.1p1/Linux_RHEL6-x86_64-gcc4.4.7/include/JANA/JFactory.h
JANA >> DParticleComboBlueprint
JANA >> DParticleCombo:DCDCTrackHit:CDC (evnt) -- line:279 /home/gluex/gluex/jana/jana_0.7.1p1/Linux_RHEL6-x86_64-gcc4.4.7/include/JANA/JFactory.h
JANA >> DParticleCombo:PreKinFit
JANA >> DAnalysisResults:DCDCTrackHit:CDC (evnt) -- line:279 /home/gluex/gluex/jana/jana_0.7.1p1/Linux_RHEL6-x86_64-gcc4.4.7/include/JANA/JFactory.h
JANA >> DAnalysisResults:PreKinFit
JANA >> DAnalysisResults:DTrackCandidate -- line:279 /home/gluex/gluex/jana/jana_0.7.1p1/Linux_RHEL6-x86_64-gcc4.4.7/include/JANA/JFactory.h
JANA >> DAnalysisResults
JANA >> JEventLoop:OneEvent (evnt) -- line:590 src/JANA/JEventLoop.cc
JANA >>----------------------------
src/JANA/JEventLoop.cc:593 [1m EXCEPTION : std::exception[0m
src/JANA/JApplication.cc:1182 [1m EXCEPTION caught for thread 140677753460480 : std::exception[0m
JANA ERROR>>
JANA ERROR>> Automatic relaunching of threads is disabled. If you wish to
JANA ERROR>> have the program relaunch a replacement thread when a stalled
JANA ERROR>> one is killed, set the JANA:MAX_RELAUNCH_THREADS configuration
JANA ERROR>> parameter to a value greater than zero. E.g.:
JANA ERROR>>
JANA ERROR>> jana -PJANA:MAX_RELAUNCH_THREADS=10
JANA ERROR>>
JANA ERROR>> The program will quit now.
JANA >>
JANA >>Telling all threads to quit ...
JANA >>Merging thread 0 (0x7ff21785d700) ...
JANA >>Merging event reader thread ...
JANA >> 1 events processed (11 events read) Average rate: 0.0Hz
Closed ROOT file
JANA >>Closing shared object handle 0 ...
JANA >>Closing shared object handle 1 ...
===========================================================
There was a crash.
This is the entire stack trace of all threads:
===========================================================
#0 0x0000003ca9aac90d in waitpid () from /lib64/libc.so.6
#1 0x0000003ca9a3e909 in do_system () from /lib64/libc.so.6
#2 0x0000003ca9a3ec40 in system () from /lib64/libc.so.6
#3 0x00007ff2230afe28 in TUnixSystem::StackTrace() () from /group/halld/Software/ExternalPackages/ROOT/v5.34.01/root_Linux_CentOS6-x86_64-gcc4.4.6/lib/libCore.so
#4 0x00007ff2230ae923 in TUnixSystem::DispatchSignals(ESignals) () from /group/halld/Software/ExternalPackages/ROOT/v5.34.01/root_Linux_CentOS6-x86_64-gcc4.4.6/lib/libCore.so
#5 <signal handler called>
#6 0x0000003cb0a92932 in std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long) () from /usr/lib64/libstdc++.so.6
#7 0x0000003cb0a92baf in std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*) () from /usr/lib64/libstdc++.so.6
#8 0x0000000000afc557 in jana::JApplication::~JApplication (this=0x7fffb8e2d890, __in_chrg=<value optimized out>) at src/JANA/JApplication.cc:443
#9 0x000000000057b6f2 in DApplication::~DApplication (this=0x7fffb8e2d890, __in_chrg=<value optimized out>) at libraries/DANA/DApplication.cc:185
#10 0x00000000005782e0 in main (narg=3, argv=0x7fffb8e2dea8) at programs/Analysis/hd_root/hd_root.cc:49
===========================================================
The lines below might hint at the cause of the crash.
If they do not help you then please submit a bug report at
http://root.cern.ch/bugs. Please post the ENTIRE stack trace
from above as an attachment in addition to anything else
that might help us fixing this issue.
===========================================================
#6 0x0000003cb0a92932 in std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long) () from /usr/lib64/libstdc++.so.6
#7 0x0000003cb0a92baf in std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*) () from /usr/lib64/libstdc++.so.6
#8 0x0000000000afc557 in jana::JApplication::~JApplication (this=0x7fffb8e2d890, __in_chrg=<value optimized out>) at src/JANA/JApplication.cc:443
#9 0x000000000057b6f2 in DApplication::~DApplication (this=0x7fffb8e2d890, __in_chrg=<value optimized out>) at libraries/DANA/DApplication.cc:185
#10 0x00000000005782e0 in main (narg=3, argv=0x7fffb8e2dea8) at programs/Analysis/hd_root/hd_root.cc:49
===========================================================
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